LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Dere12g1056	ATGGAAACGCTGCAGGACCCACCAAACCCTCCGCCTCCGCCGCCGTTGCTGCCGCCTCTCCAAAACCCTAACTTCCTCTTCCCGGCGTCGTCGCTGGTGCCGGAAAAGCCTTTGGACCCGCAAGGGCTCCTTGACATTGACTGGGTTAACCTTTTCTCAGGGCAGACGACCAGCTTGGTTGGGGTTGGTGATGGGGATGATACAGCTAGTGCATCTTACAGGCCAGTAATGGAAGGTGCTTCCTTGTCTTCGTCGTTGATGGCTGAAAATGGAGGTCATGAAGATATGGAGAAGGGGATTAATAAAGAAAAAAGAAGAGGAGGAGGAAGGCTGAAGAAAACGACGAGGCCTAGGTTTGCGTTTCAGACCAGAAGTGCTGATGATATTCTCGACGATGGTTATCGTTGGAGGAAATATGGCCAGAAAGCTGTCAAGAATAGCATTTATCCCAGGAGCTACTACCGATGCACACATCACACATGCAATGTGAAGAAACAAGTGCAGAGGTTGTCGAAGGACACAAGCATCGTGGTGACAACGTACGAGGGAATCCACAACCACCCATGCGAGAAGCTCATGGAAACCCTCACTCCTCTTCTCAAGCAACTCCAGTTCCTCTCGAGGTTTTAG	630	0.5095	METLQDPPNPPPPPPLLPPLQNPNFLFPASSLVPEKPLDPQGLLDIDWVNLFSGQTTSLVGVGDGDDTASASYRPVMEGASLSSSLMAENGGHEDMEKGINKEKRRGGGRLKKTTRPRFAFQTRSADDILDDGYRWRKYGQKAVKNSIYPRSYYRCTHHTCNVKKQVQRLSKDTSIVVTTYEGIHNHPCEKLMETLTPLLKQLQFLSRF	209

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Dere12g1056	209	Gene3D	WRKY domain	115	189	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Dere12g1056	209	PANTHER	WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED	92	191	IPR044810	GO:0003700
	Dere12g1056	209	SMART	WRKY_cls	130	189	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Dere12g1056	209	MobiDBLite	consensus disorder prediction	1	22	-	-
	Dere12g1056	209	MobiDBLite	consensus disorder prediction	1	23	-	-
	Dere12g1056	209	FunFam	WRKY transcription factor 57	116	190	-	-
	Dere12g1056	209	Pfam	WRKY DNA -binding domain	131	188	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Dere12g1056	209	ProSiteProfiles	WRKY domain profile.	125	190	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Dere12g1056	209	SUPERFAMILY	WRKY DNA-binding domain	123	189	IPR036576	GO:0003700\|GO:0006355\|GO:0043565

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Dere12g1056	Dere-ChrDere12	20352197	20355430	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Dere12g1056	109	208	WRKY Transcription Factor Family	AT1G64000	77.228	2.08e-55	173

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	WRKY	Dere12g1056		WRKY	5.4e-25	CL0274