Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere12g1042 ATGGAGGACGATTGGGATCTGCACGCCGTCGTTAGAGGCTGCGCCACCATCACCTCCTCCTCTTCCTCCGCCGTCACAACCACCGCCAGCACCTCGTCTGCCTTTGGGTTTCCTGTGTTTGTTGGGAGTGAAAAGGTGGGGCAAGTTTTGTCCCTTTCAGATTTAGACCCTTTTGAAGCCAGAACTAGTTCTTCCATTGAAGAGCTGCATGAGCTTTGTAAGCCTTTCTTCCCCAAATCCAAGCCTCCTCCTTCTTCTTCCTCGTCACAAGCTTCTCCTCTGTCTTCATCGTCTTCCTTCTCTTATAACTCTTCCTCTGCACCCAACAAACCGCTTCAGACTCAGCAGAAACAACAGAATCTGCAGCCCAAGAACAAGGTGTCTCATGCTGGTTCTGTCTCCAACCCCCCAAGATCTAAGAGAAGGAAGAACCAGCTCAAGAAAGTTTGTCAGGTTCCAGCTGAGTCTCTCTCCTCTGATATATGGGCATGGCGGAAATATGGCCAGAAACCCATCAAGGGCTCTCCATATCCAAGGGGATACTACAGATGCAGCAGTTCAAAAGGATGCTTGGCTCGGAAACAAGTGGAGAGGAATAGATCGGACGCATCGATGTTCATAGTCACCTACACGGCGGAGCACAACCACCCTGCTCCTACTCACCGGAACTCCCTCGCCGGATCCACCCGCCAGAAGCCCTTGACGGCCACCGCAGCCGCCGCCGGTGACTCTGACAGCGCCCCGACAAAACCCGTCTCTCCTGCTACCTCTGGGGTGGAAGAAGAGACAGCACCTCAAAGCACAGAACTAGAAAACAAGGTAGAGATGGAAGATTTGATGGATGAAGAGGAAGAAGATGAGTTTGGGTTATCAGATTCGGTGTTAACCGACGATTTCTTTGAAGGGTTAGACGAACTAACAGGGCCGTCGCCTCCGCCGGCGGTGGCGGTCACCGGAGACACCTTCGCCGACCCCTTCTCGACTGCTTTCGCTCTTCCGGCTTGGGCTTGGGCGGCGAATAATGCTGCCGCCACCGCTGCCGGGGGCAATTACTGA 1056 0.5369 MEDDWDLHAVVRGCATITSSSSSAVTTTASTSSAFGFPVFVGSEKVGQVLSLSDLDPFEARTSSSIEELHELCKPFFPKSKPPPSSSSSQASPLSSSSSFSYNSSSAPNKPLQTQQKQQNLQPKNKVSHAGSVSNPPRSKRRKNQLKKVCQVPAESLSSDIWAWRKYGQKPIKGSPYPRGYYRCSSSKGCLARKQVERNRSDASMFIVTYTAEHNHPAPTHRNSLAGSTRQKPLTATAAAAGDSDSAPTKPVSPATSGVEEETAPQSTELENKVEMEDLMDEEEEDEFGLSDSVLTDDFFEGLDELTGPSPPPAVAVTGDTFADPFSTAFALPAWAWAANNAAATAAGGNY 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere12g1042 351 Gene3D WRKY domain 142 212 IPR036576 GO:0003700|GO:0006355|GO:0043565
Dere12g1042 351 ProSiteProfiles WRKY domain profile. 153 219 IPR003657 GO:0003700|GO:0006355|GO:0043565
Dere12g1042 351 SMART WRKY_cls 158 218 IPR003657 GO:0003700|GO:0006355|GO:0043565
Dere12g1042 351 MobiDBLite consensus disorder prediction 216 235 - -
Dere12g1042 351 Pfam WRKY DNA -binding domain 160 217 IPR003657 GO:0003700|GO:0006355|GO:0043565
Dere12g1042 351 FunFam WRKY transcription factor 22 142 212 - -
Dere12g1042 351 MobiDBLite consensus disorder prediction 83 139 - -
Dere12g1042 351 SUPERFAMILY WRKY DNA-binding domain 156 219 IPR036576 GO:0003700|GO:0006355|GO:0043565
Dere12g1042 351 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 3 307 IPR044810 GO:0003700
Dere12g1042 351 MobiDBLite consensus disorder prediction 213 286 - -
Dere12g1042 351 MobiDBLite consensus disorder prediction 77 152 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere12g1042 Dere-ChrDere12 20173919 20175423 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere12g1042 1 348 WRKY Transcription Factor Family AT4G01250 45.892 8.21e-86 259
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Dere12g1042 WRKY 7.7e-25 CL0274
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere12g1042 12 20173919 20175423 Dere12g1042 12 20173919 20175423 ECH