Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere12g1039 ATGCACCTTTATAATTTTGATGAGAGAGAAGAACAGAGAAGGAAGAGAGAGACTACACAGCGAGAGATGAGCGATGATGAAGGAGGAGGCTTTGCCGGGACCATTTGCTCAATATGCTACGAAGATCTCCAGCCCATTGTTGAAGACCTCCAATCCATCACTATCTGCGGCCACGTCTTCCACGAGCTCTGTTTGCAGCAATGGTTCGAGTACTGTTCAAGAGCAAAGAAGTGCACTTGCCCTGTGTGCAAGCAGAGTTGTAGAGCAACCGATGCTGTTCGGTTGTATTTCCAGTCCGTTGGGGATGTGAAGGATGCCGTTCTTTCTGAAAAACCCATTAGGTATGAAGAGGAGGATGCAGGGGTGTTGCGTAGGGAAGTGAAAAGATTGGAGGTGAAAGTTTCGGGCCTTAGTTCAGCATTGGAGCGGCAAGGGAAGGAGTTGAAAGATCTTACTGAGGAGCTTTGTGCTTGCAAAGAGCAGGCAAAATTGGATATTGAATTTAAAAATGAAACCTTGAAACAAAAAGCATTCATACAACACCAGCTTCGTATGAAATCTGAGGAGCTTGAAAAGTCTACTTTGGAGTGTTTGCGATTACAAGATAGAAATATGGCACTGGCTAAAGAACTTGCAGCATTCAAATTAGTATCAGATCTGGACCTTGATGAAGATGAGGTTTTGAAGCTTGCCACTTTGGGTAATGGATCCAACAGTAAAGATACAATAGACACCTTGAGAAGATCTTTGGTCATGCGGAACAGGAGTTACAAAGAATTAATGGCCAAGTGCAATATTCTAGGAAGAGGGGAGGCACGTTATAGTAAAAAGCTTGAGAAGGCTAAAGAGAAAATCAAGAAACTGAAGGCAATGGTACAAGAGCTGGAAACAGCAGCTGAAGTAAAAGAGAATGAAATCCTAAGGTCTCTGAAAGTCTCAAAGAAAATAGGTTCCTCAAAGAATCTTGAATGCAATAGCAATTATAATTCTGATATGTTGTTCGCTAGTGAATTTTCATCAGAAGAGCATGGGAAGCAAATTTTGCCACCTCATTCTAGAACAGATCTCTCTATGAACATCAATAATAAATTTTTGCTATCTGCAAAGATAGAGAACCTTAATGATAAAGAAAGTAAAGAAAATGAAGTGAATTTCAGCAAAAGGAACTTAACTGGGATGTCTCCTGGTGGAGGGAAAAACTACATCTTGATTGATGAAGATGATTCAGACTTTACTCAAGCTTTGCCTGGGCATGAAAAGTACAACCATAAAGACCAAGATAGTGATACTGTTGCTCCTAGGAAGCCCACTCTAGCAAGCTCAGATGCAGCTTCTGGTGCAAAGAGAGAAACTGTAATGCAAGAAGAATATAAGTTAGCTGAGCCAATAAGAATTGATGTGGACGATGACTTGGGCAAAAATGCTGCTGGTACTATGGTTGAAGATGTGACATTACTAGATAAGGTGAAACAAGTTCAACCCATGATTAACATTCAAAAAGAAAATCCATCTCCATTAGCTCTTTCCACTCCAGGTGATATCTGTTTTTCTGGTGGTTTACTTGGTCCTGATGGAACTAATCGATACTTGGGTAAATGGTGCAAGCGTGGACAGAACAAGGAATCGTTTTCTACAAAAGTTTCAAGCAATGGTGATTTGATAGCCGTTGGGGCTGATGGTAGAGGTGGTAGAGTTAAAGTTCTGAGATCTCTAAACCAAACCTTCCAGGATAGTAAGGAGAATTCAGTTGCTTCAAAAAGGTTGAAATTCGGACCTAAAGCAAGTAGCATGCAGTCCCAGGGGTGTCTGCAGATAGAACACTTCTTTGACAGGACAGATTTACCTCCAAAGATTGTTATAGAACCTTTCTTTCGAATTCATGTCCGATAA 1890 0.4101 MHLYNFDEREEQRRKRETTQREMSDDEGGGFAGTICSICYEDLQPIVEDLQSITICGHVFHELCLQQWFEYCSRAKKCTCPVCKQSCRATDAVRLYFQSVGDVKDAVLSEKPIRYEEEDAGVLRREVKRLEVKVSGLSSALERQGKELKDLTEELCACKEQAKLDIEFKNETLKQKAFIQHQLRMKSEELEKSTLECLRLQDRNMALAKELAAFKLVSDLDLDEDEVLKLATLGNGSNSKDTIDTLRRSLVMRNRSYKELMAKCNILGRGEARYSKKLEKAKEKIKKLKAMVQELETAAEVKENEILRSLKVSKKIGSSKNLECNSNYNSDMLFASEFSSEEHGKQILPPHSRTDLSMNINNKFLLSAKIENLNDKESKENEVNFSKRNLTGMSPGGGKNYILIDEDDSDFTQALPGHEKYNHKDQDSDTVAPRKPTLASSDAASGAKRETVMQEEYKLAEPIRIDVDDDLGKNAAGTMVEDVTLLDKVKQVQPMINIQKENPSPLALSTPGDICFSGGLLGPDGTNRYLGKWCKRGQNKESFSTKVSSNGDLIAVGADGRGGRVKVLRSLNQTFQDSKENSVASKRLKFGPKASSMQSQGCLQIEHFFDRTDLPPKIVIEPFFRIHVR 629
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere12g1039 629 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 8 111 IPR013083 -
Dere12g1039 629 PANTHER RING ZINC FINGER PROTEIN-RELATED 28 612 - -
Dere12g1039 629 MobiDBLite consensus disorder prediction 412 431 - -
Dere12g1039 629 MobiDBLite consensus disorder prediction 1 24 - -
Dere12g1039 629 Coils Coil 271 305 - -
Dere12g1039 629 ProSiteProfiles Zinc finger RING-type profile. 36 84 IPR001841 -
Dere12g1039 629 MobiDBLite consensus disorder prediction 412 450 - -
Dere12g1039 629 SMART ring_2 36 83 IPR001841 -
Dere12g1039 629 SUPERFAMILY RING/U-box 35 88 - -
Dere12g1039 629 Coils Coil 134 154 - -
Dere12g1039 629 MobiDBLite consensus disorder prediction 1 28 - -
Dere12g1039 629 Pfam Ring finger domain 35 84 IPR001841 -
Dere12g1039 629 CDD RING-H2 36 84 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere12g1039 Dere-ChrDere12 20132517 20136648 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere12g1039 465 613 C3H Transcription Factor Family AT4G01270 38.854 7.32e-22 97.4