Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere12g1028 ATGGTGTCTGTGAACCCAAATCCAGCTCAAGGTTTTTACTTCTTCGATCCCATGAATATGGGTCTTCATGGTCTCAACCACCCTCTGCCGCCCCCGGCTTCGTCGGCGACGAACACTACTGCCGGCGCCAATACGGCGCCGTATGCGGATGATCCGAATAAGAAGATCCGAAAACCGTATACGATTACCAAATCCCGCGAGAACTGGTCGGAGCAGGAGCACGACAAGTTTCTCGAAGCTCTCCAACTATTCGATCGAGACTGGAAGAAGATTGAAGCATTTGTTGGGTCAAAAACCGTTATCCAGATAAGAAGTCATGCGCAGAAGTATTTTCTGAAAGTTCAGAAGAATGGAACTAGTGAACATGTACCTCCCCCGCGGCCAAAGAGAAAAGCTGCTCACCCTTATCCACAGAAGGCCCCTAAAAATGCTCCATCAGTGCCCCAAGGTACTGGGCTATTGCAAGGTTCATCTGCTTTCAATGAACCTTCATACTTTTATAGGCCAGACTCTTCATCTGTGCTTGGGACACCAGTTACCAGGGTGCCTTTGTCATCCTGGAGTTATAATACTACACCACCTGTCAGCATGCCACAAGTGGCTAAAGATGGCATGGGATTGGTTGGACAAGCTCTTCCTCGGAATTGTTGCTATAGCAGTAGTAATGAGAGCACTCCCAGGGCTTGGCCAAATAGTAAAGTTATAGATCAAGTGGACCAAGGCAAGCCGGTAACAGCAATTCCAGATTTTGCACAAGTCTACAGGTTCATGGGTAGTGTATTTGATCCAAATGCAACCGATCACCTACAGAGACTAAAACAGATGGAGCCTATAAATGTGGAAACTGTGTTGTCATTGATGACAAACCTCTCCATCAATTTAATGAGTCCCAAGTTTGAGGATCATAGAAAATTGCTTTCGTCGTATGATGTTGACTCCAGGATGGTGAAGACTATCAATCATTGCAGCGATCCCTTGACCAATAAATCTGAAAGTGCTGTTCTTTCTGCTTAG 1014 0.4615 MVSVNPNPAQGFYFFDPMNMGLHGLNHPLPPPASSATNTTAGANTAPYADDPNKKIRKPYTITKSRENWSEQEHDKFLEALQLFDRDWKKIEAFVGSKTVIQIRSHAQKYFLKVQKNGTSEHVPPPRPKRKAAHPYPQKAPKNAPSVPQGTGLLQGSSAFNEPSYFYRPDSSSVLGTPVTRVPLSSWSYNTTPPVSMPQVAKDGMGLVGQALPRNCCYSSSNESTPRAWPNSKVIDQVDQGKPVTAIPDFAQVYRFMGSVFDPNATDHLQRLKQMEPINVETVLSLMTNLSINLMSPKFEDHRKLLSSYDVDSRMVKTINHCSDPLTNKSESAVLSA 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere12g1028 337 MobiDBLite consensus disorder prediction 31 46 - -
Dere12g1028 337 MobiDBLite consensus disorder prediction 115 154 - -
Dere12g1028 337 Pfam Myb-like DNA-binding domain 66 111 IPR001005 -
Dere12g1028 337 SUPERFAMILY Homeodomain-like 60 116 IPR009057 -
Dere12g1028 337 ProSiteProfiles Myb-like domain profile. 61 111 IPR001005 -
Dere12g1028 337 CDD SANT 68 111 IPR001005 -
Dere12g1028 337 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 61 115 IPR017930 -
Dere12g1028 337 ProSiteProfiles SANT domain profile. 64 117 IPR017884 -
Dere12g1028 337 Gene3D - 68 116 - -
Dere12g1028 337 NCBIfam myb-like DNA-binding domain, SHAQKYF class 64 113 IPR006447 GO:0003677
Dere12g1028 337 PANTHER SWI/SNF COMPLEX-RELATED 34 295 - -
Dere12g1028 337 SMART sant 65 113 IPR001005 -
Dere12g1028 337 MobiDBLite consensus disorder prediction 30 55 - -
Dere12g1028 337 FunFam protein REVEILLE 6 isoform X1 68 116 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere12g1028 Dere-ChrDere12 19898982 19903312 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Dere12g1028 Myb_DNA-binding 7.9e-11 CL0123