Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere12g1026 ATGTCAGTATACGACGCCGCTTTTTTTGATACGGAGCTCTCCAGACGCACCTCAATTTTCGGCCTCCGACTCTGGGTCGTCGTCGGGATTCTCGTCGGCGTTGTCATTGTCCTTTCCCTCTTCCTCCTCTCTCTGTGCCTCACCTGCCGCCGCCAGCGGCGCCGCGGCGCCGGTGATCCGAAGAAGATTTACGACCCTAAAGACGCGGGAACACCTGTTGTAACGAAGGAAATCGTGGAGATCGTACACCTACCGGGACCCAACCAGCACCACCCCGCGCCGCCTCCGCCTCCGGAGATCCACGTGGATATTGGAAAATCGGGGCACCGGGTTGTGGTGTTACCCGATCGGATTTCTAGTGGAGAGAGCAGGGGCACGGCCGCGAGTGCTTCTGAAACTACATCGTCTTTTGGTAGTGGGAGTATTGGGCCAGAGGTTTCGCATTTGGGGTGGGGAAGATGGTATACTCTGAGAGAGCTTGAAGTTGCGACTAATGGGCTGTGTGAAGAAAACGTGGTTGGGGAAGGTGGCTATGGAATAGTGTACAAAGGAGTACTCAGTGATGGTACTAGGGTTGCAGTCAAAAACCTATTAAATAACAAAGGTCAAGCTGAGAAAGAATTTAAAGTGGAGGTGGAAGCTATTGGTCGTGTGCGACACAAGAACCTTGTTAGGCTGCTTGGATACTGTGTTGAGGGAGCATACAGGATGCTTGTTTATGAGTATGTTGATAATGGCAATCTAGAACAATGGCTCCATGGGGATGTTGGAGCTGTAAGCCCTCTGACATGGGATATCCGTATGAACATCATATTGGGCACTGCAAAAGGATTGGCCTATCTTCATGAGGGTCTTGAACCAAAGGTTGTCCACCGAGATGTGAAATCTAGCAACATACTCCTTGATCGCCATTGGAACCCCAAGGTCTCTGATTTCGGGCTTGCTAAACTCTTGTGTTCTGACCATAGTTATGTCACTACTCGAGTGATGGGCACATTTGGTTATGTTGCACCAGAGTATGCCTGCACTGGAATGCTGACTGAGAAGAGTGATATTTATAGCTTTGGAATACTTCTCATGGAGATAATTACTGGGAGAAGTCCAGTTGATTACAGTAGACCACAGGGAGAGGTCAATTTAATAGATTGGTTAAAAACCATGGTTGCGAATCGAAAAGCCGAGCAAATAGTCGATCCTAAGCTCCCCGAGATGCCATCTTCGAAAGCTCTCAAACGCACTCTGCTGGTTGCTCTTCGATGTGTTGATCCTGATGCAACCAAGAGGCCTAAAATGGGGATTGTCATTCACATGCTTGAGGCAGATGACCTGCTATTCCGTGATGTGAGTTCTGAACGCCGGACTGGAGAATCTTCCCGTTCCCAACCCAATTATCAGCAAGAGCAGAGGGCATTGAATTTAGATAAAAGAAGTATAGGAGGAGGAATCACTGATCAAAGTGAAGCAGATGATAGTAGTTCAAGTCATCATCAGTCAACTAGGTGGAGATGA 1509 0.4864 MSVYDAAFFDTELSRRTSIFGLRLWVVVGILVGVVIVLSLFLLSLCLTCRRQRRRGAGDPKKIYDPKDAGTPVVTKEIVEIVHLPGPNQHHPAPPPPPEIHVDIGKSGHRVVVLPDRISSGESRGTAASASETTSSFGSGSIGPEVSHLGWGRWYTLRELEVATNGLCEENVVGEGGYGIVYKGVLSDGTRVAVKNLLNNKGQAEKEFKVEVEAIGRVRHKNLVRLLGYCVEGAYRMLVYEYVDNGNLEQWLHGDVGAVSPLTWDIRMNIILGTAKGLAYLHEGLEPKVVHRDVKSSNILLDRHWNPKVSDFGLAKLLCSDHSYVTTRVMGTFGYVAPEYACTGMLTEKSDIYSFGILLMEIITGRSPVDYSRPQGEVNLIDWLKTMVANRKAEQIVDPKLPEMPSSKALKRTLLVALRCVDPDATKRPKMGIVIHMLEADDLLFRDVSSERRTGESSRSQPNYQQEQRALNLDKRSIGGGITDQSEADDSSSSHHQSTRWR 502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere12g1026 502 SUPERFAMILY Protein kinase-like (PK-like) 145 439 IPR011009 -
Dere12g1026 502 FunFam Probable serine/threonine-protein kinase At1g01540 147 242 - -
Dere12g1026 502 FunFam Putative receptor-like serine/threonine-protein kinase 243 454 - -
Dere12g1026 502 ProSitePatterns Protein kinases ATP-binding region signature. 173 195 IPR017441 GO:0005524
Dere12g1026 502 MobiDBLite consensus disorder prediction 455 472 - -
Dere12g1026 502 ProSitePatterns Serine/Threonine protein kinases active-site signature. 289 301 IPR008271 GO:0004672|GO:0006468
Dere12g1026 502 MobiDBLite consensus disorder prediction 450 502 - -
Dere12g1026 502 ProSiteProfiles Protein kinase domain profile. 167 444 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere12g1026 502 PANTHER OS01G0323000 PROTEIN 8 463 - -
Dere12g1026 502 SMART serkin_6 167 445 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere12g1026 502 Pfam Protein kinase domain 170 431 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere12g1026 502 MobiDBLite consensus disorder prediction 122 140 - -
Dere12g1026 502 CDD STKc_IRAK 173 439 - -
Dere12g1026 502 Gene3D Transferase(Phosphotransferase) domain 1 243 450 - -
Dere12g1026 502 Gene3D Phosphorylase Kinase; domain 1 148 242 - -
Dere12g1026 502 MobiDBLite consensus disorder prediction 119 140 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere12g1026 Dere-ChrDere12 19850357 19853287 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere12g1026 26 495 Trihelix Transcription Factor Family AT5G38560 37.815 1.97e-94 299
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-V Dere12g1026 Pkinase 6.9e-47 CL0016