Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere12g1020 ATGGCCTCTTCTCCTGCTCTTGCACCCGTGAAGCACCCCACTGCAACACCCTCCTGCCCTTGCTCCTCATCTCCTTCCTCCTGTCACTGTTCACCATTATCACGGCCCATTACCTATAATTATTGTCTAGCAACTCAGAAGCTGCGAACAATGATAGGGAAATACCCAAAAGGATCAACGTCCCCATCGTCTTTTGCAGGACATGAGCAAGAGAACAGAAGCTCGTTGGATTTCTACATTGGCATTTTGGGCTCTAGAAGTCGAGGACAATGGAGATAGACCAGAGGCAAATGTAAGCGCAGCAAGAGAGTACGATGCAGATTGGAGGAGATTTTGTCTTGCGGCTTAAGGGAAGGAGAAGACGTTGTCCATGGGGTGCATGGTACTTCCCGTTTCGGAGTCGGACATCTCAAGCAGAGTTCGGAAGAGATGTCTGCTGAAACAGTCTCTGCTTCAGCTGATCCCAACGTCAAAGGGGTACCCACCCATGGTGGACGCTACGTTCAGTACAATGTGTACGGAAATCTATTCGAAGTTTCAAGGAAGTACGTGCCTCCTATTCGACCTGTCGGCAGAGGTGCTTACGGTATTGTTTGTGCTGCTGTAAATGCCAAGACTAATGAGGAAGTTGCCATTAAGAAGGTTGGCAATGCATTTGACAACAGAATAGATGCCAAAAGGACCTTGCGTGAAATTAAACTGCTTCGGCACATGGATCATGAAAATGTGATAGCCCTCAAAGATATCATACGACCTCCACAGAAGGAGAATTTCAATGATGTGTACATTGTTTATGAATTAATGGATACTGATCTGCATCAAATAATACGTTCCAATCAACCATTGACTGATGATCATTGTCGGTATTTTCTGTATCAGTTGTTGCGAGGACTCAAATATGTACATTCGGCAAATGTTTTGCATCGTGATTTAAAGCCTAGCAATTTGCTCATGAATGCCAATTGTGACCTTAAGATTGGAGACTTTGGACTTGCCAGAACTACATCTGAAACTGATTTTATGACCGAGTATGTAGTTACTCGATGGTACAGAGCTCCAGAATTGCTTCTTAATTGTTCAGAATATACTGCAGCTATTGATATATGGTCTGTTGGTTGCATCCTTGGTGAAATTATGACAAGACAACCCCTCTTCCCTGGCAAAGATTATGTCCATCAGCTAAGACTGATCACAGAGCTTATAGGTTCACCTGATGATGCTAGCCTTGGATTTCTACGAAGTGATAATGCCCGTAGATATGTAAGACAGCTTCCACCATATCCCAGACAACAGTTTTCTGCTAGATTTCCCAACATGTCTCCTGGTGCTGTTGATTTGCTGGAGAAGATGCTTGTCTTTGATCCAAACAGGCGCATTACAGTTGACGAGGCTCTGTCCCACCCATACTTGGCACCTCTCCATGATATAAATGAGGAACCCGTTTGCCCCAGACCTTTCAGTTTTGATTTTGAGCAACCGTCATTCACTGAAGAAGATATTAAGGAACTTATCTGGAGAGAATCTGTGAAGTTCAATCCTGACCCTCCAATTTACTGA 1557 0.4419 MASSPALAPVKHPTATPSCPCSSSPSSCHCSPLSRPITYNYCLATQKLRTMIGKYPKGSTSPSSFAGHEQENRSSLDFYIGILGSRSRGQWRXTRGKCKRSKRVRCRLEEILSCGLREGEDVVHGVHGTSRFGVGHLKQSSEEMSAETVSASADPNVKGVPTHGGRYVQYNVYGNLFEVSRKYVPPIRPVGRGAYGIVCAAVNAKTNEEVAIKKVGNAFDNRIDAKRTLREIKLLRHMDHENVIALKDIIRPPQKENFNDVYIVYELMDTDLHQIIRSNQPLTDDHCRYFLYQLLRGLKYVHSANVLHRDLKPSNLLMNANCDLKIGDFGLARTTSETDFMTEYVVTRWYRAPELLLNCSEYTAAIDIWSVGCILGEIMTRQPLFPGKDYVHQLRLITELIGSPDDASLGFLRSDNARRYVRQLPPYPRQQFSARFPNMSPGAVDLLEKMLVFDPNRRITVDEALSHPYLAPLHDINEEPVCPRPFSFDFEQPSFTEEDIKELIWRESVKFNPDPPIY 518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere12g1020 518 Pfam Protein kinase domain 188 470 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere12g1020 518 FunFam Mitogen-activated protein kinase 169 278 - -
Dere12g1020 518 ProSitePatterns Serine/Threonine protein kinases active-site signature. 306 318 IPR008271 GO:0004672|GO:0006468
Dere12g1020 518 ProSitePatterns Protein kinases ATP-binding region signature. 190 214 IPR017441 GO:0005524
Dere12g1020 518 Gene3D Transferase(Phosphotransferase) domain 1 268 497 - -
Dere12g1020 518 ProSitePatterns MAP kinase signature. 219 322 IPR003527 GO:0004707|GO:0005524|GO:0006468
Dere12g1020 518 FunFam Mitogen-activated protein kinase 268 497 - -
Dere12g1020 518 SUPERFAMILY Protein kinase-like (PK-like) 187 477 IPR011009 -
Dere12g1020 518 ProSiteProfiles Protein kinase domain profile. 184 470 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere12g1020 518 CDD STKc_TEY_MAPK 177 513 - -
Dere12g1020 518 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 182 471 - -
Dere12g1020 518 Gene3D Phosphorylase Kinase; domain 1 167 507 - -
Dere12g1020 518 SMART serkin_6 184 470 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere12g1020 Dere-ChrDere12 19794848 19807860 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere12g1020 144 513 MAP Kinase Gene Family AT4G01370 87.903 0.0 692
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_MAPK Dere12g1020 Pkinase 1e-70 CL0016