Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere12g1004 ATGGGCTTCCCAGTCGGATACTCCGAGGTCGTCTTCCCTAACATCTTCCTCCACACGCTCTCCGTCCTCGGATTCATCCGAAACCTCATTTTCCTGCTCTTCCACTCCCTCGGCCTCTCTGATTTCCTCGAAACCGAGGTCGTCTGGTCCGAATCTCACGCCCGATTGCCCGACAGCCCGCCGGTGTCGGCGCTCCTGATCCGCGAATTCCTCCCCGTCGTGAAATTCGGCGACCTCGCCGGAGACGCGCCGGAGAGTTGCGCCGTGTGCCTGTACGAGTTCCAGGGGGAGGACGAAATCAGGTGCTTGGCGAACTGCAAGCACATTTTCCACCGGGCGTGTCTCGACCGCTGGATGGATCACGATCAGAAGACGTGTCCCTTGTGTAGGACCCCCTTCGTGCCTGATGATATGCAGGATGATTTCAATCAACGGCTCTGGGCTGCTTCTGGAGTTTCTGATTTTTACGAAGAGTACACTTCGCTCTGA 489 0.5746 MGFPVGYSEVVFPNIFLHTLSVLGFIRNLIFLLFHSLGLSDFLETEVVWSESHARLPDSPPVSALLIREFLPVVKFGDLAGDAPESCAVCLYEFQGEDEIRCLANCKHIFHRACLDRWMDHDQKTCPLCRTPFVPDDMQDDFNQRLWAASGVSDFYEEYTSL 162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere12g1004 162 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 70 138 IPR013083 -
Dere12g1004 162 SUPERFAMILY RING/U-box 86 136 - -
Dere12g1004 162 SMART ring_2 87 129 IPR001841 -
Dere12g1004 162 PANTHER RING ZINC FINGER PROTEIN-RELATED 24 150 - -
Dere12g1004 162 FunFam RING-H2 finger protein ATL73 67 137 - -
Dere12g1004 162 Pfam Ring finger domain 86 130 IPR001841 -
Dere12g1004 162 ProSiteProfiles Zinc finger RING-type profile. 87 130 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere12g1004 Dere-ChrDere12 19470566 19471054 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere12g1004 1 161 C3H Transcription Factor Family AT1G63840 52.941 1.42e-56 173
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere12g1004 12 19470566 19471054 Dere12g1004 12 19470566 19471054 ECH