Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere12g1000 ATGAAGAGCCCACCGTCCTATACACGCCGCCGGAACTCCAGCTCTGGCTACCGGAGCACGCCGGAGCACCGCCGTGGTTACTCCTCTAGCTATGCCTCCTCAGAGGTCAGTACCACTGTCGTCAAGTCAAACTCCGGCCGGAACCCCGTCGCGGCTGCCGCCAGATCAGTGGCTGCGATATTCGTTGCTTGCTTCACCCCACCGGAGGCGAGTAGCTCGAAGAGCTTCGTGGATTCTGAGGAGTTCAAACCTCCCTCCTCAGTTTTATCTGTTGCTTCGAGAGCTGGTAGTCAGAGAACGCATGGTTCAAATCGAGGGGTCAATACCAGTTCATACAAGTCAACTCAGGCAAAAGACCCTGCATATCTGAATTTCAACATGGAGGATATCTTCCAAGGCACGAGAAACTTCTCCCCTACTTTCAAGATTGGCCAAGGTGGTTTTGGTACAGTCTATAAGGCACAACTCCAAGATGGAACTGTGGTCGCTATCAAACGTGCCAAGAAGAGTTTATATGAGAAGCATTTGGGTACTGAGTTCCAAAGTGAGATCCAAACGTTATCTCAGGTTGAACATTTGAATTTGGTCAAGTTCTATGGTTATTTGGAGCAAGGAGATGAAAGAATTATTGTTGTGGAGTACGTTCCAAATGGAACCCTTAGAGAGCATTTAGATTGCATTCGTGGGAACATTTTGGACCTTGCTTCTCGGCTGGACATTGCAATTGATGTGGCTCATGCTATCACCTATCTTCATACGTATATAGATCATCCTATCATTCACAGAGACATCAAATCTTCCAACATTCTTCTCACTGAAAATTTTCGAGCTAAGGTAGCTGACTTTGGTTTTGCCAGACAGGCACCTGACAGTGATTCTGGTGTGACCCATGTGTCCACCCAAGTTAAAGGAACTGCTGGCTACTTGGATCCTGAATACCTCAGAACTTATCAGCTAACTGAAAAGAGTGATGTTTATTCATTTGGCATTTTGCTTGTTGAACTTGTCACAGGTAGACGTCCCATTGAACCAAAACATGAACTCAAGGAGCGAATAACAGCAAAATGGGCTATGAAGAAATTTATTGGGGGTAATGCCATCTCGGTGTTGGACCCAAGACTAGATCAGACTCCTGCAAATAATCTGGCGCTAGAAAAGATACTTGAACTAGCCTTGCAGTGTTTGGCACCTCGTAGACAAAACAGACCTAGCATGAAGAGATGTGCTGAGATCCTTTGGACCATCCGCAAGGATTACAGAGAGCTATCAGTTTCGGATCTTCGTTCATTTTCCTCTACTTTTATCAATAAGAGAGTGAGAAACGCTTAA 1329 0.4582 MKSPPSYTRRRNSSSGYRSTPEHRRGYSSSYASSEVSTTVVKSNSGRNPVAAAARSVAAIFVACFTPPEASSSKSFVDSEEFKPPSSVLSVASRAGSQRTHGSNRGVNTSSYKSTQAKDPAYLNFNMEDIFQGTRNFSPTFKIGQGGFGTVYKAQLQDGTVVAIKRAKKSLYEKHLGTEFQSEIQTLSQVEHLNLVKFYGYLEQGDERIIVVEYVPNGTLREHLDCIRGNILDLASRLDIAIDVAHAITYLHTYIDHPIIHRDIKSSNILLTENFRAKVADFGFARQAPDSDSGVTHVSTQVKGTAGYLDPEYLRTYQLTEKSDVYSFGILLVELVTGRRPIEPKHELKERITAKWAMKKFIGGNAISVLDPRLDQTPANNLALEKILELALQCLAPRRQNRPSMKRCAEILWTIRKDYRELSVSDLRSFSSTFINKRVRNA 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere12g1000 442 ProSiteProfiles Protein kinase domain profile. 137 414 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere12g1000 442 SUPERFAMILY Protein kinase-like (PK-like) 117 415 IPR011009 -
Dere12g1000 442 Gene3D Transferase(Phosphotransferase) domain 1 215 434 - -
Dere12g1000 442 FunFam Calmodulin-binding receptor-like cytoplasmic kinase 2 97 214 - -
Dere12g1000 442 PANTHER OS01G0750732 PROTEIN 23 422 - -
Dere12g1000 442 ProSitePatterns Protein kinases ATP-binding region signature. 143 169 IPR017441 GO:0005524
Dere12g1000 442 MobiDBLite consensus disorder prediction 90 113 - -
Dere12g1000 442 Pfam Protein kinase domain 142 410 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere12g1000 442 ProSitePatterns Serine/Threonine protein kinases active-site signature. 259 271 IPR008271 GO:0004672|GO:0006468
Dere12g1000 442 MobiDBLite consensus disorder prediction 88 113 - -
Dere12g1000 442 SMART serkin_6 137 414 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere12g1000 442 CDD STKc_IRAK 143 412 - -
Dere12g1000 442 FunFam Calmodulin-binding receptor-like cytoplasmic kinase 3 215 426 - -
Dere12g1000 442 Gene3D Phosphorylase Kinase; domain 1 97 214 - -
Dere12g1000 442 MobiDBLite consensus disorder prediction 1 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere12g1000 Dere-ChrDere12 19380558 19384788 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere12g1000 59 416 Receptor kinase-like Gene Family AT1G30570 39.669 2.79e-70 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IV Dere12g1000 Pkinase 2.1e-52 CL0016