Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere12g0998 ATGGGTGGCTGCTGCTGTACTGCTCGAAAACCTCATCTGCATGGAACTTCAGTTTATATCTATCGTCCACCAGCTTTACAAGAGCGTGAGTCATTAACTTCTAATGATGGTACAGCCACTTCACTCACTGCTGGGTTGCTGGTGGGCTTGGACTTTGAGGCATCAACACCTGATACTTACCAGACCCCTCCTGCACCTCTGCCATATGATATGGTCTTCGGATGTCCAGCTTCAACTGATTCTGAATCAGGCAGAGAAACAGTTAGTGGTAGTAGTTTTGCAACTTTAATTACATGTGAAGATATCGAAGACTCAGAATGCAAAGTTCAAGATCATTCTGCTCCTATATCTCCAAGGAAGCTAGAAGTATCAAAATCAAATGACTCTAATGTATTAGTGACAGAAGAAGAGGATGGCTGCCCAATTTGTCTTGAAGAATATGATGTTGAGAATCCTAAAACTCTGACGAAGTGTGAACACCACTTTCATCTATCTTGCATTCTTGAGTGGATGGAACGAAGTGACTCTTGTCCTATATGCGATCAGGAGATGATCTTTGACCAGACACTGAATTAG 576 0.4253 MGGCCCTARKPHLHGTSVYIYRPPALQERESLTSNDGTATSLTAGLLVGLDFEASTPDTYQTPPAPLPYDMVFGCPASTDSESGRETVSGSSFATLITCEDIEDSECKVQDHSAPISPRKLEVSKSNDSNVLVTEEEDGCPICLEEYDVENPKTLTKCEHHFHLSCILEWMERSDSCPICDQEMIFDQTLN 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere12g0998 191 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 117 187 IPR013083 -
Dere12g0998 191 ProSiteProfiles Zinc finger RING-type profile. 140 181 IPR001841 -
Dere12g0998 191 CDD RING-H2_AIRP1-like 136 184 - -
Dere12g0998 191 Pfam Ring finger domain 140 180 IPR001841 -
Dere12g0998 191 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 37 188 - -
Dere12g0998 191 SMART ring_2 140 180 IPR001841 -
Dere12g0998 191 FunFam Putative E3 ubiquitin-protein ligase RHB1A 116 185 - -
Dere12g0998 191 SUPERFAMILY RING/U-box 134 187 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere12g0998 Dere-ChrDere12 19326136 19329189 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere12g0998 1 191 C3H Transcription Factor Family AT4G00335 55.497 1.99e-72 215
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere12g0998 12 19326136 19329189 Dere12g0998 12 19326136 19329189 ECH