Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere12g0996 ATGTCACTTCTCCCAACCTCCTCTTCCTCTTTCTTCGTCGTACCCATCACTTTCTTCTTTCTCTCATCTTTTGCTCTTTCCCTTTCTCAATTCGAACCAAACCAACCCATTCATCTTCCGGAAATCCATCCTAGCACTAATTTTTCACTGCCCATTTTCACAAAGGTCACTCCCATTAACGGAAAGTCACTCCCAATTGAGCAGAATCCGGAGTTCTCGAGCTCCGAAGTTGCTGAAACTGAAGGAAGAGATTCGAGCAGAGGGAGGAAGCTGGAAGCCAAGCGTGTTTTGTTAAGAGGAAACAAGACGATTCTGAGCGATAATCAGACATTCGAGCTTGGGTTCTTCAACATCAATGGCGGAGAACCGAGCTGGTATTTGGCAATACGGTACGTGTCGGTTTCGATTCCAACGTACGTCTGGGTCGCAAATCGCGAAAAAGCTAGCAAAAATCTCGCTGAATCGACGCTAGAAATCACAGAAACTGGCCTCCTAGTCGTGAAAGATTCACCAACTTCGATTCTCTGGCAGAGCACGGACACAGAAGCTTCAAGAACAGAAGAAATAAAGCTTCTAGAAAATGGGAATTTGATTCTGCTCACTCGTGAAGGCTCTGTTTCATGGCAGAGCTTCGATTTCCCCACGAACACATGGCTTCCGGGTATGAATCTGACCCGGACCCGAACATTGGTCTCGTGGCGGAGCCCCACAGACCCGTCTCCCGGATTCTATTCTCTGCGGCTGAGACCACCGTACTACGATGAGTTCGAGCTCGTTTTCAATAACTCCAAATCTTATTGGACCACCGGAAACTGGACCGGCAAATTTTTCCTTAACGTACCAGAAATGACGATTCCGTACATCTATCGCTTCCATTTCGAGCGTCCGTTCACCCCGTCGGCGTCGTTTGGGTTCTCGGAGAAGCCTCTATATAACGGGTTGAGCCCGCCCACTTTGTTCCGGGTCGAATCGTTCGGGCAGGTCCGACAGTACACCTGGTGGGCTCAGAGTGGAAGCTGGAACATGTTCTGGTCGCAGCCGGAAGATGGGTGTGAGGTTCGTGGACTGTGTGGGAGCTTCGGACTCTGCTATTTTGAAACGGTGCCGAAGTGCGAATGCATCTCCGGTTTCGAGCCATCAGACGACGGTAAATGGGCTTCCGGCGACTATTCCGGCGGGTGCCGTCGGAAAACTGATGAACGCTGCGACAAAAGTGATGGGTTTGAAGATCTCGGCATTATGAGCTTCGAAGGAGCCAATGCGCAGTCGTTTCAAGCCAAGTCTCGAAGCGATTGCGAGACGAATTGTTTAAATGACTGCGACTGCATTGGCTTGTCGTTCGACGAAAGTACCAGTTTCTGCAAGAACTTTTATGGGTCTATTCTGAATCTGCATAATTCATCTTCCTCTGTTGAGGACAATTTGTACGTTAGGGTACAAAGAGAAGTATCTGCCAAGAAATTGAATCGTCAAATTTTGACTGGTGCTATTATTGGGTCAATTGCATTTCTGGGATTAACGGTAGCGACATTGTTGGTACTACTGAATCGTAGGCAGAAGAAGAAGAGACTGGAAGAAGATGGGTTGATTCCTGTACTGAATTTACGGTTATTTTCCTACAAAGAGCTTCAATTAGCGACTCGGGGATTTTCAGAGAAGGTGGGTCATGGTGGGTTCGGGACAGTGTTTCACGGAGAATTACCAGACTCAACTCTCGTAGCCGTGAAGCGACTGGAGAGACCTGGTGGTGGAGAAAAAGAGTTCAGAGCAGAAGTTTCCACTATTGGTAACATCCAGCACGTTAATCTCGTGAGACTAAGAGGGTTTTGCTCAGAAAATTCTCATAGACTTCTCGTTTACGAGTTCATGCCGAACGGTGCTCTTAGTTCTTACCTTCGCCAAGAAGGAGGAGGGCCTTGTTTGAGCTGGGAGGTTAGGTTCCGAATAGCCCTAGGAACAGCCAAAGGCATAGCTTATTTACACGAAGAATGCCGAGATTGTATCATTCACTGTGATATCAAACCTGAAAACATACTCTTGGACAGCGATTTCACAGCAAAGGTTTCCGATTTTGGGTTGGCGAAGCTCATTGGGAGGGATTTCAGTAGGGTTCTGGCAACCATGAGAGGCACTTGGGGTTATGTGGCACCTGAGTGGATTTCTGGTGTGGCAATTACCACGAAAGCTGACGTTTACAGCTATGGGATGACATTGTTAGAGCTTATCAGTGGTCGCCGGAACGTGGAGGCACCCCCACCATCCGCTGGGGATGGCAGTCGAGAGAGCAGCAGGGGCGGCTGCGAGACCGGGGAGAAACAGAAATGGTTCTTTCCTCCATGGGCGGCACAGCAGATAATCGAGGGCAATTGGGTTGCTATAGTTGATAAGAGGCTTGGAAATGCATATAACATGGAGGAGGTGAGGAGGGTGGCTATGGTGGCTGTGTGGTGCATTCAGGATGATGAAGGAACTAGGCCTACAATGGGGATGGTGGTGAAGATGTTGGAGGGGTTAGTGGAAGTAGATGTCCCTCCAACGCCTAAATTGCTTCAAGCATTGGTCTCTGGTGAGTCCTTTCGCGGGGTGAAGGCAGATTCCTGCACCGGTGGCAGCCTCTCCGGTGGCAATGCTGGTTCAGAATCAATCACAGGGGGTGTTTCTTCCCCTGCAAATTTGAACCTCAATGTTATTGTGCGATGA 2700 0.4889 MSLLPTSSSSFFVVPITFFFLSSFALSLSQFEPNQPIHLPEIHPSTNFSLPIFTKVTPINGKSLPIEQNPEFSSSEVAETEGRDSSRGRKLEAKRVLLRGNKTILSDNQTFELGFFNINGGEPSWYLAIRYVSVSIPTYVWVANREKASKNLAESTLEITETGLLVVKDSPTSILWQSTDTEASRTEEIKLLENGNLILLTREGSVSWQSFDFPTNTWLPGMNLTRTRTLVSWRSPTDPSPGFYSLRLRPPYYDEFELVFNNSKSYWTTGNWTGKFFLNVPEMTIPYIYRFHFERPFTPSASFGFSEKPLYNGLSPPTLFRVESFGQVRQYTWWAQSGSWNMFWSQPEDGCEVRGLCGSFGLCYFETVPKCECISGFEPSDDGKWASGDYSGGCRRKTDERCDKSDGFEDLGIMSFEGANAQSFQAKSRSDCETNCLNDCDCIGLSFDESTSFCKNFYGSILNLHNSSSSVEDNLYVRVQREVSAKKLNRQILTGAIIGSIAFLGLTVATLLVLLNRRQKKKRLEEDGLIPVLNLRLFSYKELQLATRGFSEKVGHGGFGTVFHGELPDSTLVAVKRLERPGGGEKEFRAEVSTIGNIQHVNLVRLRGFCSENSHRLLVYEFMPNGALSSYLRQEGGGPCLSWEVRFRIALGTAKGIAYLHEECRDCIIHCDIKPENILLDSDFTAKVSDFGLAKLIGRDFSRVLATMRGTWGYVAPEWISGVAITTKADVYSYGMTLLELISGRRNVEAPPPSAGDGSRESSRGGCETGEKQKWFFPPWAAQQIIEGNWVAIVDKRLGNAYNMEEVRRVAMVAVWCIQDDEGTRPTMGMVVKMLEGLVEVDVPPTPKLLQALVSGESFRGVKADSCTGGSLSGGNAGSESITGGVSSPANLNLNVIVR 899
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere12g0996 899 SMART serkin_6 548 813 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere12g0996 899 SUPERFAMILY Protein kinase-like (PK-like) 531 836 IPR011009 -
Dere12g0996 899 ProSiteProfiles Bulb-type lectin domain profile. 89 212 IPR001480 -
Dere12g0996 899 SMART blect_4 95 214 IPR001480 -
Dere12g0996 899 ProSitePatterns Serine/Threonine protein kinases active-site signature. 668 680 IPR008271 GO:0004672|GO:0006468
Dere12g0996 899 Gene3D Transferase(Phosphotransferase) domain 1 623 843 - -
Dere12g0996 899 CDD PAN_AP_plant 402 479 - -
Dere12g0996 899 ProSiteProfiles Protein kinase domain profile. 548 839 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere12g0996 899 CDD STKc_IRAK 554 838 - -
Dere12g0996 899 Pfam Protein kinase domain 551 749 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere12g0996 899 MobiDBLite consensus disorder prediction 748 769 - -
Dere12g0996 899 ProSitePatterns Protein kinases ATP-binding region signature. 554 576 IPR017441 GO:0005524
Dere12g0996 899 Gene3D - 86 211 IPR036426 -
Dere12g0996 899 PANTHER OS07G0415500 PROTEIN 72 848 - -
Dere12g0996 899 Pfam S-locus glycoprotein domain 267 380 IPR000858 GO:0048544
Dere12g0996 899 FunFam Receptor-like protein kinase 4 511 622 - -
Dere12g0996 899 Gene3D Phosphorylase Kinase; domain 1 513 622 - -
Dere12g0996 899 SUPERFAMILY alpha-D-mannose-specific plant lectins 125 272 IPR036426 -
Dere12g0996 899 FunFam S-receptor-like kinase 5 623 844 - -
Dere12g0996 899 ProSiteProfiles PAN/Apple domain profile. 402 480 IPR003609 -
Dere12g0996 899 MobiDBLite consensus disorder prediction 64 86 - -
Dere12g0996 899 PIRSF SRK 79 884 IPR024171 GO:0004674
Dere12g0996 899 CDD B_lectin 95 214 IPR001480 -
Dere12g0996 899 Pfam D-mannose binding lectin 138 228 IPR001480 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere12g0996 Dere-ChrDere12 19263074 19265773 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere12g0996 538 845 Receptor kinase-like Gene Family AT5G20050 47.022 2.09e-78 260
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Dere12g0996 Pkinase 7.1e-45 CL0016