Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere12g0992 ATGCATCCATCCATGTATGATGATCACCATGGGGCGACTTATAATCTTAGAGAGAGGTTGAAGTGTGACAAGAAGCTTTTATTTGGAAAATCTGCGTCTGCTTCAAGAGTCTCTTCAGATTCATCCTTGGAAAACCAGGGTAATATGGAGAGAACTTCTAGTCCTCACACTGAAGATTCTGCTGAGAAACAGTCGCATGATTCCTCTACTGCACCATTGGGCTTTGATAAATGTAGCACAGTGCCCATCCCTCTGGGGCCAAATCATCAAGCTAAAGTACCAGAATGGACTGGCATGACTTCTGAAAGTGATCCTAAGTGGTTGGGGACCCAAATATGGCCATCAGATAAAGTGAATCACAGACTTCTCATTGAGAGGGACCCCATTGGCAAGGGGAGACAAGATTTGTGTGGCTGCCAAGTAGCGGGTTCTGTTGAGTGTGTCAGATTTCACGTTGCTGAGAAAAGGGCTAAGGTTAAGCTGGAATTGGGTGTGGCCTTTTACCAGTGGAATTTAGATAAGGTAGGTGAAGAAGTTAGGCAATCGTGGACAGTGGAAGAAGAGAAGAAGTTTAAGGATGTGGTGCGATCAAACCCTCCATCACTTGAGAGATACTATTGGGATCATATTTTTAGATCATTTCCTAAAAAGACCAGGGAAGATTTAGTTAGCTACTATTTCAACGTCTTTCTTTTGCAGCGCAGAGGACATCAGAATAGGCATACTCCAAATGATATTGACAGTGATGATGATGAATCAGAATTTGGACCATTGAGGAATGTTTTTGGACAGCAAGCACAGAAGCCTACCACCTCTATCTTACTAACCCCCAAAAAGACACAGACAAGGAACAAATAG 858 0.4312 MHPSMYDDHHGATYNLRERLKCDKKLLFGKSASASRVSSDSSLENQGNMERTSSPHTEDSAEKQSHDSSTAPLGFDKCSTVPIPLGPNHQAKVPEWTGMTSESDPKWLGTQIWPSDKVNHRLLIERDPIGKGRQDLCGCQVAGSVECVRFHVAEKRAKVKLELGVAFYQWNLDKVGEEVRQSWTVEEEKKFKDVVRSNPPSLERYYWDHIFRSFPKKTREDLVSYYFNVFLLQRRGHQNRHTPNDIDSDDDESEFGPLRNVFGQQAQKPTTSILLTPKKTQTRNK 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere12g0992 285 CDD SANT 182 230 IPR001005 -
Dere12g0992 285 SMART sant 179 232 IPR001005 -
Dere12g0992 285 Pfam Myb-like DNA-binding domain 180 229 IPR001005 -
Dere12g0992 285 SMART ELM2_2 83 134 IPR000949 -
Dere12g0992 285 MobiDBLite consensus disorder prediction 30 73 - -
Dere12g0992 285 MobiDBLite consensus disorder prediction 32 54 - -
Dere12g0992 285 MobiDBLite consensus disorder prediction 263 285 - -
Dere12g0992 285 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 2 1 280 - -
Dere12g0992 285 MobiDBLite consensus disorder prediction 239 285 - -
Dere12g0992 285 SUPERFAMILY Homeodomain-like 179 230 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere12g0992 Dere-ChrDere12 19183506 19184363 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Dere12g0992 Myb_DNA-binding 4.2e-07 CL0123