Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere12g0990 ATGCAATCTACTGGCGCTGATGTTGGTGGGCCGGGTCGGAACCCGGGAGTCGGGCAGGCAGGGCGCGCTGCATCAACATCGTCAGCTGCATCCCCGTCCTCTTCGTCGTCGGCAGTGTCGACGTCGCACTTGGGGTTGGACACGTTGCAGCAGCAGCAGCAGCACCACCACCACCACCAGCAGATAGGTTCTAGGCAGTCATTGCAACAGCAACTTCTTAGAAAATCTGAAGGGACTGAAACATTTTTAGCATATCAAGCAGGGCTTCAAGGGGTGTATGGGAGTAACTATTTCTCATCACCCAGTCCCATGCAACCGCCTCAGCAGTCTCGGAAATTCATTGATTTAGCTCAGCATGGTTCCAGCCAGGAGGCCCAGGCCCAGGCTCAAGGCATGGAGCAACACATGCTTAATCCTGCCCATCAAGCATACCTTCAATATGCTATGCAAGCTGCCCAACAAAGGTCTGCTTTGTTAATGCAGTCACAGCAGCAAACTAAAATGGGAATGTTAGGTCCTTCAACTGTGAAGGATCAGGAAATGCATATGGGAAATTTGAAGATGCAGGAACTAATTCCTTTGCAGGCTGTCAATCAAGCTCAATGTCTGATCCCCAGGAATTCATCTGAACAACTTGCTCGTGGTGAAAAGCAGACTGAACAGGGACAGCAACAAGCAACTGATCAGAAGAGTGAGGGAAAGTCTTCAACCCAGGGACCAGCCACTGGGCACTTAATGCCTGGAAATATCATAAGGCCCATGCAAACACCAACTCCTCATGGCAACCAAAGTGCTGTAAACAATCAGATTTCAGCATCTGCTCAATTGCAGGCTATGCAGGCATGGGCACATGAACGTAATATTAATTTAGCACATCCTGCAAATGCTAACTTGATGGCACAACTCATTCCAATGATGCAGTCGAAGATGGCTTCACAACAAAAGCCAAATGATAGCAACATTGGTTCTCAGTCATCGCCTGTTCATGTTTCAAAGCAGCAAGTTACTTCTCCAGTGGTTGCAAGTGAGAGCCCAGCACATGCTAAGTCATCAAGTGACGTGTCTGGGCAATCAGGATCTGCAAAAGCCAGGCAGACAGTTCCCCCCAGTCAATTTGGTCCACAGACAAATGCTTGTTCGGCCAGTAGCAACAGTAGCATGGCAGTGCAGCAATTTAGCATTCATGGAAAAGAGTCTCAAGCACCTTTTAGGCAACCAGTCATAGTTGGAAATGGACTGCCTCCTGTGCATCCCCAACAATCTTCTACTAGCATGAACCTTGTTGCAGGTCATCCTTTGAATGCAAAAAAATTGCTACCAGGTCCAGATTCACAGCAAATTCAGCACATGAGGCAGTTAAACCAATCTTCCCCTGTTGCTGGTCCCACTGGTCCCACAAATGAAGGGGCTTCAGGAAATCATGTCAAATCCATAGGGGCACCAACTCAGATACCTCAACAACGACCTGCATTTACCAAACAACAGTTGCATGTTCTTAAAGCACAGATATTAGCATTTAGGCGGCTGAAGAAAGGAGAAGTTACTCTCCCCCATGAACTTCTTCAGGCTATTGTTCCACCACCTCTTGAGTTGCAGGTGCAGCAGACAATTCATCCTGCAGGAGGACAAAATCTAGAGAAATCTGCTGGAAATACTGTAGCTGAACAACCAAGGCACATTGAGTTTAAGGCAAAGGATTCACAATCTATCCCAGCAATAAATGGACAGAGTTCTTTGAAGCAGGAAGCCTTTACCGGAGATGAGAAATCCACTGTTGCAGAAGTTCATATGCAAGCTACGCCAGTTGTGGCAAAGGAATCTACTTCTGCTGGAAAAGAAGAGCAGCAATCAATAAAGTCAGACCAGGAAAATGATCGTGGAATTAACAGAACTCCTGTTAGAACTGATTTGCCATCAGATAGGGGAAAGGCAATTGTACCACATGACACAGTTCAAAGCAGAAAACCTGCACAAACAAGTGCAGTTGCCCAATCAAAGGATGTGGCATCCACTAGAAAATATCATGGACCCCTATTTGATTTCCCTTTTTTCACTAGGAAACATGATTCCTTTGGGTCATCAGTGTTGGTGAACAATAACAATAATATGTCTCTAGCTTATGGTGTCAATGATCTTCTTTATGAGGAAGGCATGGAAGTACTTACAAAGAAAAAGACAGAGAATTTAAAGAAGATTGAAGGTTTGCTGGCAGTGAACTTGGAGAGAAAAAGAATTAGGCCAGATCTTGTCTTGAGGTTGCAAATTGAGGAGAAAAAGCTTCGTCTTTTTGATGTTCAGGCACGATTGAGGGATGAGATTGATCAGCAGCAACAAGAGATAATGGCAATGCCAGACAGGCCATATCGTAAGTTTGTTAGACTGTGTGAGCGTCAGCGTATAGATCTTGCTAGACAAGTGCAAGCCTCTCAGAGAGCTTTACGAGAGAAGCAACTCAAATCTATATTTCAGTGGCGTAAGAAGCTTCTGGAGGCACACTGGGCTGTTCGTGATGCTCGAACTGCCCGCAACAGGGGGGTTGGCAAATATCATGAGAAAATGTTGAGGGAATTCTCGAAGCATAAAGATGATGACAGGAACAAAAGGTTGGAAGCCTTAAAAAATAATGATGTTGACAGATATAGGGAGATGTTGCTAGAGCAGCGGACTAGCATTCCAGGTGATGCTGCAGAGAGATATGCTGTTCTTTCATCCTTCTTGACACAGACTGAAGATTATCTACAAAAATTGGGAAGTAAAATAACTGCTGCCAAAAATCAACAGGAAGTGGAGGAGGCAGCAAGAGCTGCTGCTGCTGCTGCACGGTTGCAGGGCCTCTCTGAAGAAGAAGTCAGAGCAGCAGCTGCTTGTGCTGGAGAGGAAGTGATGATTAGAAATCGTTTTATGGAGATGAATGCTCCTAAAGACGGTTCATCAGTCAGCAAGTATTACAACCTTGCTCATGCTGTGAATGAAAAGGTCATAAGGCAACCATCTATGTTACGAGCTGGAACCTTGAGAGACTATCAGCTTGTTGGCTTGCAATGGATGCTGTCATTGTATAACAACAAGTTAAATGGAATATTAGCAGATGAGATGGGTCTTGGTAAAACTGTGCAGGTTATGGCCTTAATTGCTTACTTGATGGAATTTAAAGGAAATTATGGTCCGCATCTTATAATAGTTCCAAATGCAGTTCTGGTTAACTGGAAGAGTGAGTTGTATAACTGGTTACCATCTGTATCATGCATTTTTTATGTCGGAGGGAAGGATCAACGGGTAAAATTATTTTCTCAAGCGGTTTCTGCTATGAAATTTAATGTCCTTGTGACAACTTATGAGTTCATCATGTATGACCGGTCAAAACTGTCAAAAATTGATTGGAAGTATATCATAATTGATGAAGCACAGAGAATGAAGGATAGGGATTCAGTTCTAGCCCGTGATCTTGATAGATATCGTTGTCAGCGACGTCTGCTTCTGACAGGAACACCGTTACAGAATGATCTGAAGGAACTCTGGTCACTTTTAAATTTACTTCTTCCGGAGGTTTTTGACAATCGAAAAGCATTTCATGATTGGTTTTCAAAACCTTTTCAAAAGGAAGGTCCTACTCAAAATGCAGAAGATGATTGGCTTGAGACAGAGAAGAAAGTTATCATTATTCATCGACTCCATCAGATTCTTGAGCCTTTCATGCTTAGGCGTCGTGTTGAAGATGTTGAAGGCTCACTACCACCAAAGGTCTCCATTGTTTTACGATGTAAAATGTCAGCTATTCAGAGTGCCATTTATGACTGGGTCAAATTCACTGGTACCCTTCGGCTTGATCCTGAGGATGAGAAGCGTAGGGTTCAAAAGAATCCAGTATACCAGGTGAAGCAGTATAAAACTTTAAATAATAGATGCATGGAGCTGCGTAAAACTTGCAATCATCCATTGCTTAATTATCCATACTTCAATGACTTGTCCAAAGATTTTCTTGTGAAATCTTGTGGGAAATTGTGGATCCTTGATAGGATCCTTATAAAACTTCAAAGAACTGGACATCGAGTCCTGCTCTTTAGTACTATGACAAAACTTCTTGACATTTTAGAAGAATACCTGCAATGGCGAGGACTTGTGTACAGAAGAATTGATGGGACAACAAGTTTGGAAGACCGTGAATCAGCTATAGTGGACTTTAATAGCCCTGGTTCAGACAGTTTCATCTTCTTGCTTAGTATTAGAGCTGCTGGGCGAGGCCTTAATCTTCAGTCTGCTGACACAGTTATCATATATGATCCTGATCCGAATCCAAAAAATGAGGAGCAGGCAGTTGCAAGAGCTCATCGCATTGGACAGACCAGAGAAGTCAAGGTTATCTACATGGAAGCAGTTGTTGACCAAATTCCTAGCCACCAAAAAGAGGATGAACATAGAAGTGGAGGCACTGTTGATTTGGAGGATGAACTTGCAGGTAAGGATCGTTATATGGGATCCATTGAGAGCCTCATTAGGAACAATATTCAACAATACAAGATTGATATGGCTGATGAGGTCATCAATGCTGGACGATTTGATCAAAGAACAACGCACGAAGAGAGACGCCTGACTTTGGAGACATTATTACATGATGAAGAAAGGTATCAAGAAACTGTCCATGATGTTCCCTCACTGCATGAAGTAAATCGCATGATTGCCAGAAGTGAAGAGGAACTCGAACTGTTTGATCAAATGGACGAAGAACTGGATTGGGCCGAGGAGATGACACGGTATGATCAGGTGCCTAAGTGGCTTAGAGCCAGTACAAGAGAAGTCAATGCCACTATTGCTGCATTATCAAAAAGACCATCAAAGAACACTATCATGGGTGGTAGTATTGGTATGGAGTCCAGTGAAATGGGTTCTGATGCATCTGCAAAAACTGAAAGGAGAAGGGGACGGCCCAAGGGAAAAAAATATCCTAATTATAAGGAGTTAGAAGATGAAAATGGAGAATCCTCTGAAGCAAGTTCTGAAGAAAGAAATGGATATTCTGCACATGAAGAAGGAGGAATAGGAGAATTTGATGATGATGGGTATAGTGTGGCTGATGGAGGTCAACTGATCAATAAGGATCAAATGGATGATGGTCCACTTTGTGATGCAGTATATGAATTTCCTCGATCCTCAGAAAGCATGAGAAATAATCATATGGTTGAAGAAGCTGGTTCCTCAGGATCATCCTCAGACAGTCAGAGATTGACAGAGACATTATTTCCTTCAGTTTCCTCTCAGAAATTTGGTTCCCTCTCTGCATTAGATTGCAGGCCAAGTTCCATTTCCAAAAGGATGGCAGATGACTTAGAGGAAGGGGAGATTGCAGTATCTGGTGATTCTCACATGGAGCACCAGCAGTCTGGCAGTTGGATTCATGATCGTGATGAAGGTGAAAATGAACAAGTTTTGCAACCCAAATTTAAACGTAAACGTAGTCGTCGTGTTCGGCCGCGTCATGCTACGGAAAAGCTTCAGGAAAAGTCTAGTAGTGAGATCGCATCTTTTCAATGTGGAGAATCAGCTCATTATATAGTCCAAGCAGACCATAAGTATCATGCACAATCAAGGGTTGACCTAGATGCAAAATCATTTGGAGAATCCAATTCCACCAGGCGTGATCAAAATGAGTCATTGTTAAAAAATAAGCGAAGTTTACCTTCAAAGAGAGTAGCTAATACATCTAAATTGCATGGCTCGCCTAAATCTAGTAGAATGAATTGCATGTCTGCTCCATCTGAGGATGGCGGTGAACAATTCAGAGAAAAGTGGGAGGGTAAACATATCAATTCAAGTGTGTCTTCAGCTTTTGGTGCTCAAATGCCTGAAATAATCCAGAGAAAGTGCAAGAATGTATTTAGCAAGTTTCAAAAGAGAATAGATAAGGAAGGTCATCAAATTGTACCTTTGCTTACTGATTTTTGGAAGAATAATTCTGGATACACTGGTGGGTCTGGGAATATTTTGCTGGATTTACGAAAGATCGATCAGCGAATTGATAGGTTGGAATATAATGGAGTATTGGAGCTTGTATGTGACGTGCAGTTCATGTTGAAGAGTGCAATGGAGTTTTATGGGTTCTCACATGAGGTAAGATCTGAAGCAAGGAAGGTCCATGATCTCTTTTTTGATATCTTGAAAGTAGTATTTCCTGATATGGACTTTCAAGGGCCACGGAGTGCACTTTCTTTCTGTGGTCCGACTTCTGCTAGCACTCTAACATCCCCAAGGCAACTGACTGTAAGTCAAGGCAGGAGGCACAAGCCAGTAAACGAGGTGGAATCTGATTTGAGCCCTTCACAGAAGCAACTGCAACGGGGATTCATTTCAAGTGGTGAGAGCACCAGGATCAGAGTACATCTGCCACCGAAGGATTCAAGAACTGGAATCGGTTCTGGCAGCACCCGCGAGCAAGTTCAGCAGGAAGATTCTCCGTTGCTCACACATCCAGGTGAACTGGTTGTATGCAAGAAGAGAAGAAATGAGAGGGACAAATCATTGGTGAAGTCTAGGACTGGGTCAGTAGGTCCTGTTTCACCACCTGGTCCTGCTATGAGAAGTCCCGGGCCAAGTTCAGTCTTAAAGGATGCTAGACTGGCTCAACAGACTGCTCAAAAGTGGGCGCGCCAGCCATCTCAACAACCAAGTGGGTCTCGTGGATCGGTTGGCTGGGCGAATCCTGTGAAGCGGTTGAGGACAGATTCTGGGAAGAGGAGGCCGAACCATCTGTAG 6747 0.4362 MQSTGADVGGPGRNPGVGQAGRAASTSSAASPSSSSSAVSTSHLGLDTLQQQQQHHHHHQQIGSRQSLQQQLLRKSEGTETFLAYQAGLQGVYGSNYFSSPSPMQPPQQSRKFIDLAQHGSSQEAQAQAQGMEQHMLNPAHQAYLQYAMQAAQQRSALLMQSQQQTKMGMLGPSTVKDQEMHMGNLKMQELIPLQAVNQAQCLIPRNSSEQLARGEKQTEQGQQQATDQKSEGKSSTQGPATGHLMPGNIIRPMQTPTPHGNQSAVNNQISASAQLQAMQAWAHERNINLAHPANANLMAQLIPMMQSKMASQQKPNDSNIGSQSSPVHVSKQQVTSPVVASESPAHAKSSSDVSGQSGSAKARQTVPPSQFGPQTNACSASSNSSMAVQQFSIHGKESQAPFRQPVIVGNGLPPVHPQQSSTSMNLVAGHPLNAKKLLPGPDSQQIQHMRQLNQSSPVAGPTGPTNEGASGNHVKSIGAPTQIPQQRPAFTKQQLHVLKAQILAFRRLKKGEVTLPHELLQAIVPPPLELQVQQTIHPAGGQNLEKSAGNTVAEQPRHIEFKAKDSQSIPAINGQSSLKQEAFTGDEKSTVAEVHMQATPVVAKESTSAGKEEQQSIKSDQENDRGINRTPVRTDLPSDRGKAIVPHDTVQSRKPAQTSAVAQSKDVASTRKYHGPLFDFPFFTRKHDSFGSSVLVNNNNNMSLAYGVNDLLYEEGMEVLTKKKTENLKKIEGLLAVNLERKRIRPDLVLRLQIEEKKLRLFDVQARLRDEIDQQQQEIMAMPDRPYRKFVRLCERQRIDLARQVQASQRALREKQLKSIFQWRKKLLEAHWAVRDARTARNRGVGKYHEKMLREFSKHKDDDRNKRLEALKNNDVDRYREMLLEQRTSIPGDAAERYAVLSSFLTQTEDYLQKLGSKITAAKNQQEVEEAARAAAAAARLQGLSEEEVRAAAACAGEEVMIRNRFMEMNAPKDGSSVSKYYNLAHAVNEKVIRQPSMLRAGTLRDYQLVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELYNWLPSVSCIFYVGGKDQRVKLFSQAVSAMKFNVLVTTYEFIMYDRSKLSKIDWKYIIIDEAQRMKDRDSVLARDLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSKPFQKEGPTQNAEDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCKMSAIQSAIYDWVKFTGTLRLDPEDEKRRVQKNPVYQVKQYKTLNNRCMELRKTCNHPLLNYPYFNDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRGLVYRRIDGTTSLEDRESAIVDFNSPGSDSFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQTREVKVIYMEAVVDQIPSHQKEDEHRSGGTVDLEDELAGKDRYMGSIESLIRNNIQQYKIDMADEVINAGRFDQRTTHEERRLTLETLLHDEERYQETVHDVPSLHEVNRMIARSEEELELFDQMDEELDWAEEMTRYDQVPKWLRASTREVNATIAALSKRPSKNTIMGGSIGMESSEMGSDASAKTERRRGRPKGKKYPNYKELEDENGESSEASSEERNGYSAHEEGGIGEFDDDGYSVADGGQLINKDQMDDGPLCDAVYEFPRSSESMRNNHMVEEAGSSGSSSDSQRLTETLFPSVSSQKFGSLSALDCRPSSISKRMADDLEEGEIAVSGDSHMEHQQSGSWIHDRDEGENEQVLQPKFKRKRSRRVRPRHATEKLQEKSSSEIASFQCGESAHYIVQADHKYHAQSRVDLDAKSFGESNSTRRDQNESLLKNKRSLPSKRVANTSKLHGSPKSSRMNCMSAPSEDGGEQFREKWEGKHINSSVSSAFGAQMPEIIQRKCKNVFSKFQKRIDKEGHQIVPLLTDFWKNNSGYTGGSGNILLDLRKIDQRIDRLEYNGVLELVCDVQFMLKSAMEFYGFSHEVRSEARKVHDLFFDILKVVFPDMDFQGPRSALSFCGPTSASTLTSPRQLTVSQGRRHKPVNEVESDLSPSQKQLQRGFISSGESTRIRVHLPPKDSRTGIGSGSTREQVQQEDSPLLTHPGELVVCKKRRNERDKSLVKSRTGSVGPVSPPGPAMRSPGPSSVLKDARLAQQTAQKWARQPSQQPSGSRGSVGWANPVKRLRTDSGKRRPNHL 2248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere12g0990 2248 CDD SF2_C_SNF 1331 1456 - -
Dere12g0990 2248 MobiDBLite consensus disorder prediction 2078 2248 - -
Dere12g0990 2248 Gene3D - 1245 1454 IPR027417 -
Dere12g0990 2248 FunFam Brahma1 1945 2066 - -
Dere12g0990 2248 MobiDBLite consensus disorder prediction 2099 2117 - -
Dere12g0990 2248 MobiDBLite consensus disorder prediction 308 384 - -
Dere12g0990 2248 MobiDBLite consensus disorder prediction 616 630 - -
Dere12g0990 2248 FunFam ATP-dependent helicase BRM 1245 1455 - -
Dere12g0990 2248 MobiDBLite consensus disorder prediction 1868 1889 - -
Dere12g0990 2248 MobiDBLite consensus disorder prediction 1 73 - -
Dere12g0990 2248 SMART QLQ_2 489 526 IPR014978 GO:0005524|GO:0005634|GO:0006355
Dere12g0990 2248 MobiDBLite consensus disorder prediction 2158 2174 - -
Dere12g0990 2248 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1336 1513 IPR001650 -
Dere12g0990 2248 MobiDBLite consensus disorder prediction 2201 2226 - -
Dere12g0990 2248 MobiDBLite consensus disorder prediction 1892 1915 - -
Dere12g0990 2248 PANTHER SNF2/RAD54 HELICASE FAMILY 727 1716 - -
Dere12g0990 2248 ProSiteProfiles QLQ domain profile. 490 526 IPR014978 GO:0005524|GO:0005634|GO:0006355
Dere12g0990 2248 Gene3D - 1945 2068 IPR036427 GO:0005515
Dere12g0990 2248 MobiDBLite consensus disorder prediction 602 643 - -
Dere12g0990 2248 SMART bromo_6 1947 2056 IPR001487 GO:0005515
Dere12g0990 2248 MobiDBLite consensus disorder prediction 210 265 - -
Dere12g0990 2248 MobiDBLite consensus disorder prediction 1792 1812 - -
Dere12g0990 2248 MobiDBLite consensus disorder prediction 2133 2150 - -
Dere12g0990 2248 MobiDBLite consensus disorder prediction 455 477 - -
Dere12g0990 2248 MobiDBLite consensus disorder prediction 1610 1629 - -
Dere12g0990 2248 MobiDBLite consensus disorder prediction 1781 1838 - -
Dere12g0990 2248 SMART ultradead3 1001 1190 IPR014001 -
Dere12g0990 2248 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1017 1182 IPR014001 -
Dere12g0990 2248 MobiDBLite consensus disorder prediction 1868 1922 - -
Dere12g0990 2248 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 987 1235 IPR027417 -
Dere12g0990 2248 SUPERFAMILY Bromodomain 1996 2058 IPR036427 GO:0005515
Dere12g0990 2248 Pfam Helicase conserved C-terminal domain 1335 1446 IPR001650 -
Dere12g0990 2248 SMART helicmild6 1362 1446 IPR001650 -
Dere12g0990 2248 Pfam SNF2-related domain 1008 1312 IPR000330 GO:0005524|GO:0140658
Dere12g0990 2248 FunFam ATP-dependent helicase BRM 996 1244 - -
Dere12g0990 2248 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1239 1576 IPR027417 -
Dere12g0990 2248 Gene3D - 996 1244 IPR038718 -
Dere12g0990 2248 MobiDBLite consensus disorder prediction 1610 1707 - -
Dere12g0990 2248 Pfam QLQ 490 524 IPR014978 GO:0005524|GO:0005634|GO:0006355
Dere12g0990 2248 MobiDBLite consensus disorder prediction 20 73 - -
Dere12g0990 2248 MobiDBLite consensus disorder prediction 210 243 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere12g0990 Dere-ChrDere12 19109850 19122886 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere12g0990 1026 1471 RAD5 or RAD16-like Gene Family AT1G02670 25.813 2.46e-28 121
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Dere12g0990 SNF2_N 1.2e-64 CL0023
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere12g0990 12 19109850 19122886 Dere12g0990 12 19109850 19122886 ECH