Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere12g0972 ATGACTGTGGTGAGTCCTGTGCCTCCAATTCCAGAAAGGTTTAATTCAGTGAGCTTGCTTACTGATTTTGGAGTCACCGGAATCATGGCTGGTATGGAAAAAATTGTAGAGGAGCCTAAAACAGGTGTGGTTTATGACACTATATCTATCGCTGTGGCAAAAGATGTGAGTGAGAGCAAATCAAATCTGATATGGGCAATACAGCACTCAGGAGGAAAGAAGATTTGCATCCTCCATGTTCATGTCCCTGCAACTATGATCCCCTTGATGGGTACTAAATTTCCAGCAAGTTCATTGAAAGAACAGGAAGTTGAAGCGTACCGGGAAATTGAAAGGCAAAGCATGCATAAGAATCTAAATGAGTATCTTCTCATCTGTTTAAGAATGGGGGTGCAGGCAGAAAAACTGCATATTGAGATGGGATGCATCGAGAAAGGCATTGTAGAGCTTGTCTCCCAGCATGGTATCTCTAAACTTGTCATGGGAGCAGCATCTGATAAGTATCATTCTAGGAAAATGATGGACCTCAAATCCAAGAAAGCCATTTATGTACGTGAACATGCTCCAGCTTATTGTCAAATACAGTTTGTCTGCAAAGGCCACCTTATACTCACTAGGAATCATCGGTTGGATGATGGTAATGTAGATGTTCCATCAACTTTGCCACAGCAAAGGCCAAACCTTGAAGCTGTACATCCACTTCAGTTGAGGTCTCAATCTATTACAATGGGGCAAAATCATCAGTTAAAACTCAGTAATGCAGATCAAGATTCACTTCGCAGAGCAAGGTCTGCCAATGCTGGGCGTGGAGGGAGACCAATGGTTTTTTCTTCTCCAGATGACACAGAAGTGTTTTCCACTCCAAGTAACAGGTTGGGTACTGAAGTAAGTTCTGATGGCTCAGATGGGCTATCAAGAAGGAGTCTTTCAGTTTTCTCAACCTGCTCTGACAGTGGTGCAGTCGAAGCTGCATTGACCCGAAATTTGATTTCTGAGGGGAGTGAGACTGTAATTGAATCAAGTGAATTTTCTCCAGTTATAATGAATCATCGCGACTCATCTCCTCCTAGCGTACTGGATGGAGGAATGGATGATCCACTCTATGATCAGCTTGAACAGGCCATGGATGAGGCTGAGAATGCAAGGCAGGATGCATATAATGAAGCACTTAAACGAGGGAAAGCTGAAAAAGAAGCCATTGATGCTATGCGTAAGGCTAAAGCCTCTGAAAGGTTGTATAAAGAAATATTGAATCTAAGGAAAATGGCAGAGGAAACACTAGAAAAAGAAAGAGAAGAACTTGAAAGGATGAAGAGCGAGCGAGACGAAGTTAAAGAAGAACTTCGACTTGCCCTAGATCAAAAGTCGTCGCTGGAGAGTCAAATTGCATCATCTGAACTCAAGGTAAAGGAGTTGGAGCAGAAGATTATATCTGTTGCGGATCTGTTAACAAATTACATGAAAGAAAGAGATGAGTTGCAGACGCAGCGTGACAATGCTTTGAGAGAGGCTGAGGAGTTGAGGAAAAAACAAGGAGCGGCTTCGCACACACAAGTGCCTGAGTTGTTTCTAGAATTCTCTTTTCAAGAGATTGAGCAAGCAACGAGTAACTTTAATTTATCCCTGAAGATTGGAGAAGGCGGATATGGAAGTATATATAAAGGTGTCTTGCGTCATACTGAAGTGGCTATAAAAATTTTGCATGCGAATAACCAATCGCAAGGACCCTCTGAGTTTCAACAGGAGATTGACGTATTGAGTAAGTTAAGGCATCCCAACCTTATTACACTCCTAGGAACCTGCCCAGAATCCTGGACTCTTGTCTACGAGTATCTACCAAATGGAAGCCTCGAAGATCGGCTCAACTGCAAGGATAACACAGCTCCGCTATCATGGCAAACTCGAATCCGCATTGCTGCAGAGCTCTGCTCTGCTCTCATCTTTCTTCACTCCAGTAAACCTCATAGCATAGTGCACGGAGACTTGAAACCCTCCAATATTCTCCTTGATGCAAACCTTGTTTGCAAGCTTAGTGACTTCGGAATTTGTCGTATATTATCCAAAGATGATACTCCAGAGTGTTGGAGAACTATCCCAAAGGGGACTTTTGCCTACATGGATCCTGAATTCCTTGCATCGGGGGAACTTACACCTAAATCAGATGTTTATTCATTTGGAGTCATATTATTAAGATTGTTGACTGGGAGACCAGCCTTGGGAATAACAAGGGAAGTGCAGTATGCATTAGATACTGGAAAGTTGAAATCCCTCTTGGATCCTTTGGCTGGACACTGGCCATTTGTGCAAGCTGAACAGTTGGCTCGCTTGGCTTTGAGGTGTTGTGAGATGAATAGAAAGAGTCGACCGGATGTTCATTCAGATGTCTGGCGAAAACTGGAAGCGATGAGCACATTTTCTGGAGGCACAAGCTCCTTCAAACTCGGTTATGAAGAGCCTGACCAACCTCCTCCATATTTTATTTGCCCAATCTACCAGGAAATCATGCGAGATCCACATATTGCTGCAGATGGTTTCACTTATGAAGCTGAGGCTATACGAGGATGGCTCCATAGTGGTCAAGACACTTCACCAATGACAGATGCGAAGCTTGAACATAGTAATCTTGTACCAAACCATGCTCTTCGCTCTGTAATTCAGGACTGGCTTCAAAACCACTAA 2679 0.4323 MTVVSPVPPIPERFNSVSLLTDFGVTGIMAGMEKIVEEPKTGVVYDTISIAVAKDVSESKSNLIWAIQHSGGKKICILHVHVPATMIPLMGTKFPASSLKEQEVEAYREIERQSMHKNLNEYLLICLRMGVQAEKLHIEMGCIEKGIVELVSQHGISKLVMGAASDKYHSRKMMDLKSKKAIYVREHAPAYCQIQFVCKGHLILTRNHRLDDGNVDVPSTLPQQRPNLEAVHPLQLRSQSITMGQNHQLKLSNADQDSLRRARSANAGRGGRPMVFSSPDDTEVFSTPSNRLGTEVSSDGSDGLSRRSLSVFSTCSDSGAVEAALTRNLISEGSETVIESSEFSPVIMNHRDSSPPSVLDGGMDDPLYDQLEQAMDEAENARQDAYNEALKRGKAEKEAIDAMRKAKASERLYKEILNLRKMAEETLEKEREELERMKSERDEVKEELRLALDQKSSLESQIASSELKVKELEQKIISVADLLTNYMKERDELQTQRDNALREAEELRKKQGAASHTQVPELFLEFSFQEIEQATSNFNLSLKIGEGGYGSIYKGVLRHTEVAIKILHANNQSQGPSEFQQEIDVLSKLRHPNLITLLGTCPESWTLVYEYLPNGSLEDRLNCKDNTAPLSWQTRIRIAAELCSALIFLHSSKPHSIVHGDLKPSNILLDANLVCKLSDFGICRILSKDDTPECWRTIPKGTFAYMDPEFLASGELTPKSDVYSFGVILLRLLTGRPALGITREVQYALDTGKLKSLLDPLAGHWPFVQAEQLARLALRCCEMNRKSRPDVHSDVWRKLEAMSTFSGGTSSFKLGYEEPDQPPPYFICPIYQEIMRDPHIAADGFTYEAEAIRGWLHSGQDTSPMTDAKLEHSNLVPNHALRSVIQDWLQNH 892
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere12g0972 892 ProSitePatterns Serine/Threonine protein kinases active-site signature. 657 669 IPR008271 GO:0004672|GO:0006468
Dere12g0972 892 PANTHER OS02G0152300 PROTEIN 49 887 - -
Dere12g0972 892 SUPERFAMILY RING/U-box 818 891 - -
Dere12g0972 892 ProSiteProfiles Protein kinase domain profile. 538 805 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere12g0972 892 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 50 165 - -
Dere12g0972 892 Coils Coil 368 388 - -
Dere12g0972 892 SMART serkin_6 538 805 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere12g0972 892 Pfam Protein kinase domain 541 792 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere12g0972 892 ProSitePatterns Protein kinases ATP-binding region signature. 544 565 IPR017441 GO:0005524
Dere12g0972 892 MobiDBLite consensus disorder prediction 251 306 - -
Dere12g0972 892 ProSiteProfiles U-box domain profile. 821 892 IPR003613 GO:0004842|GO:0016567
Dere12g0972 892 Pfam U-box domain 823 892 IPR003613 GO:0004842|GO:0016567
Dere12g0972 892 Coils Coil 413 510 - -
Dere12g0972 892 CDD RING-Ubox_WDSUB1-like 823 878 - -
Dere12g0972 892 Gene3D Phosphorylase Kinase; domain 1 516 611 - -
Dere12g0972 892 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 820 892 IPR013083 -
Dere12g0972 892 Gene3D Transferase(Phosphotransferase) domain 1 612 809 - -
Dere12g0972 892 CDD STKc_IRAK 544 800 - -
Dere12g0972 892 CDD STK_N 47 200 - -
Dere12g0972 892 SMART Ubox_2 825 888 IPR003613 GO:0004842|GO:0016567
Dere12g0972 892 Gene3D HUPs 41 165 IPR014729 -
Dere12g0972 892 SUPERFAMILY Protein kinase-like (PK-like) 517 792 IPR011009 -
Dere12g0972 892 MobiDBLite consensus disorder prediction 280 306 - -
Dere12g0972 892 FunFam receptor-like protein kinase FERONIA 501 611 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere12g0972 Dere-ChrDere12 18734747 18740206 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere12g0972 1 892 U-box Gene Family AT2G45910 53.363 0.0 891
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Dere12g0972 Pkinase 1.2e-45 CL0016