Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere12g0943 ATGGCATTCACAGGAACTTTGGATAAATGCAATGCATGTGATAAGACTGTCTATGTGGTGGACATGTTGTCCCTTGAAGGAGTACCTTACCATAAATCCTGCTTCAAATGCAGCCACTGCAAGGGATTCCTTTCGATGAGCAGCTACTCCTCAATGGATGGTGTCCTCTATTGCAAACCACATTTTGAGCAGCTTTTCAAGGAATCTGGCAATTTTAGCAAGAACTTTCACACAGCAAAGTCTTCTGAAAAATCAAATGACATGAGCAAGAACCAAAACAAACTCTCTTCCCTGTTCAGTGGAACCCAAGACAAATGTGCAGTTTGCACTAAAACAGTATATCCACTGGAAAAGGTAACCCTGGAAGGAGAATGCTACCACAAGAGTTGCTTTAGGTGTGCTCATGCAGGGTGCCCTCTCACACACTCCTCCTATGCTGCTCTTGATGGAGTGCTCTATTGCAGGCACCACTTTGCTCAGCTCTTCATGGAGAAAGGCAATTACCACCATGTTCTTCAAGCTGCTGCAAACAAGAAGAACAGCACTCCTCCTCCTGAGCTTGAGCACCCTGAAGAGGAGTCACAGCCAGAGGAGCCATCTGAGGACCAAAAAGAGGAAGAAGATGAATCTTAG 633 0.4534 MAFTGTLDKCNACDKTVYVVDMLSLEGVPYHKSCFKCSHCKGFLSMSSYSSMDGVLYCKPHFEQLFKESGNFSKNFHTAKSSEKSNDMSKNQNKLSSLFSGTQDKCAVCTKTVYPLEKVTLEGECYHKSCFRCAHAGCPLTHSSYAALDGVLYCRHHFAQLFMEKGNYHHVLQAAANKKNSTPPPELEHPEEESQPEEPSEDQKEEEDES 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere12g0943 210 FunFam LIM domain and actin-binding 1 4 74 - -
Dere12g0943 210 PANTHER OS06G0237300 PROTEIN 6 86 - -
Dere12g0943 210 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 2 35 - -
Dere12g0943 210 ProSiteProfiles LIM domain profile. 8 68 IPR001781 -
Dere12g0943 210 MobiDBLite consensus disorder prediction 175 210 - -
Dere12g0943 210 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 98 131 - -
Dere12g0943 210 Gene3D Cysteine Rich Protein 100 170 - -
Dere12g0943 210 FunFam LIM domain and actin-binding 1 100 170 - -
Dere12g0943 210 ProSiteProfiles LIM domain profile. 104 164 IPR001781 -
Dere12g0943 210 Pfam LIM domain 106 161 IPR001781 -
Dere12g0943 210 Pfam LIM domain 10 65 IPR001781 -
Dere12g0943 210 CDD LIM1_SF3 6 68 - -
Dere12g0943 210 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 132 171 - -
Dere12g0943 210 ProSitePatterns LIM zinc-binding domain signature. 10 44 IPR001781 -
Dere12g0943 210 MobiDBLite consensus disorder prediction 191 210 - -
Dere12g0943 210 SMART lim_4 9 61 IPR001781 -
Dere12g0943 210 SMART lim_4 105 157 IPR001781 -
Dere12g0943 210 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 36 76 - -
Dere12g0943 210 Gene3D Cysteine Rich Protein 5 72 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere12g0943 Dere-ChrDere12 17787301 17790388 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LIM Dere12g0943 LIM 7.3e-11 CL0167