Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere12g0938 ATGAACAATAGAGCTAGATATCCGCCTGGGATGGGCGCAGGCCGTGGGGGAGGTATGAACTTGAACCCTGCGTTTCAGCCGCGACCCGCTCAGCAACAGTATGTGCAGAGGCATATGGTGCAGAATCAACCGCAGTATCAACAGCATCAACAACATCAACAGCAGTTACAGCAACAACAGCAGCAGTTACAGCAACAACAATGGCTTAGAAGAGCTCAGTTGAGTGGTACTGATTCTAACGTGGTTGATGAGGTCGAGAAGACTGTACAGTCTGAAGCCGTTGATTCAAGTTCACAAGATTGGAAGGCAAGATTAAAGATACCACCACCTGATACGCGTTATAAGACTGAGGATGTGACAGCAACTAAAGGAAATGAATTTGAAGATTACTTTTTGAAGCGTGAGCTACTTATGGGAATATATGAGAAGGGTTTTGAGAGACCGTCCCCTATCCAGGAAGAAAGTATTCCAATTGCTCTTACTGGTAGTGACATTCTTGCTAGGGCTAAAAATGGAACTGGAAAAACGGCTGCTTTTTGCATTCCGGCTCTGGAAAAAATTGATCAGGATAACAATGTTATTCAAGTTGTTATACTGGTCCCAACACGAGAGTTGGCTTTGCAAACATCTCAAGTGTGCAAAGAGCTGGGAAAGCATTTGAAAATTCAAGTTATGGTGACAACTGGTGGTACCAGCCTGAAAGATGATATTATGCGTTTATATCAACCTGTTCATTTATTAGTTGGAACTCCAGGAAGAATATTAGATCTTGCAAAGAAGGGTGTTTGCATCCTGAAAGATTGTAATATGCTTGTTATGGATGAGGCCGATAAGCTTCTGTCCCCAGAGTTCCAACCTTCGATAGAGCAGCTGATTCGTTTTCTACCTCCAACCCGTCAAATCCTGATGTTTTCAGCTACTTTTCCTGTTACTGTAAAGGACTTCAAAGATAGATATCTTCAAAAACCATATATCATTAACCTTATGGATGAGCTAACCCTGAAAGGTATTACACAATTTTATGCATTTGTGGAAGAAAGACAGAAAGTACACTGCCTGAACACTCTTTTCTCTAAGCTGCAAATAAATCAGTCAATTATCTTCTGCAATTCAGTGAATCGGGTCGAACTCCTTGCCAAGAAAATCACAGAACTTGGGTATTCATGTTTCTATATTCATGCAAAGATGTTGCAAGATCATCGTAATAGAGTATTTCATGACTTCCGCAACGGTGCATGTAGGAATCTTGTTTGTACTGATCTTTTTACTAGGGGAATAGACATTCAAGCAGTCAATGTGGTCATTAATTTTGATTTTCCCAAGAATTCAGAAACTTATCTGCACAGGGTTGGTCGCTCAGGGAGGTTTGGGCACCTTGGTCTAGCAGTTAACTTGATCACTTATGAGGATCGCTTTAATTTATATAGGATTGAGCAAGAACTTGGCACAGAAATAAAGCAAATTCCACCGCACATTGATCAGGCAATTTATTGTCGGTGA 1500 0.4113 MNNRARYPPGMGAGRGGGMNLNPAFQPRPAQQQYVQRHMVQNQPQYQQHQQHQQQLQQQQQQLQQQQWLRRAQLSGTDSNVVDEVEKTVQSEAVDSSSQDWKARLKIPPPDTRYKTEDVTATKGNEFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLKIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLAKKGVCILKDCNMLVMDEADKLLSPEFQPSIEQLIRFLPPTRQILMFSATFPVTVKDFKDRYLQKPYIINLMDELTLKGITQFYAFVEERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPHIDQAIYCR 499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere12g0938 499 CDD DEADc_DDX6 127 327 - -
Dere12g0938 499 FunFam ATP-dependent RNA helicase DDX6 330 499 - -
Dere12g0938 499 Coils Coil 46 69 - -
Dere12g0938 499 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 336 496 IPR001650 -
Dere12g0938 499 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 156 326 IPR014001 -
Dere12g0938 499 Pfam DEAD/DEAH box helicase 150 314 IPR011545 GO:0003676|GO:0005524
Dere12g0938 499 Gene3D - 86 329 IPR027417 -
Dere12g0938 499 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 125 153 IPR014014 GO:0003724
Dere12g0938 499 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 60 498 - -
Dere12g0938 499 Pfam Helicase conserved C-terminal domain 351 457 IPR001650 -
Dere12g0938 499 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 272 280 IPR000629 -
Dere12g0938 499 CDD SF2_C_DEAD 337 466 - -
Dere12g0938 499 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 195 479 IPR027417 -
Dere12g0938 499 FunFam ATP-dependent RNA helicase DDX6 106 329 - -
Dere12g0938 499 Gene3D - 330 499 IPR027417 -
Dere12g0938 499 SMART ultradead3 144 340 IPR014001 -
Dere12g0938 499 MobiDBLite consensus disorder prediction 1 30 - -
Dere12g0938 499 SMART helicmild6 376 457 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere12g0938 Dere-ChrDere12 17728495 17733734 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere12g0938 125 496 Eukaryotic Initiation Factors Gene Family AT3G19760 38.770 1.48e-96 296
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere12g0938 12 17728495 17733734 Dere12g0938 12 17728495 17733734 ECH