Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere12g0923 ATGGATCGGGGGGACCAAATGGCGTTATCAGGTTCTGCATCTTACTATATGCAGAGGGGAATAGCTGGTTCTGCGGCACAGCCTGAGCTACATGGTTCACCAAGTATTCGGCCACTGTCCAATTTCAATCTATCGTTTCAACCCAACATTGGAAGTGGTACCATTGGATCCACACTGCCGTTAGAATCTTCCGCAATTTCACCTCATGGAGTCAATGTAGGCACTCCTTCTGGGGTGCCATCTGGGGAACCTGTCAAAAGGAAGAGAGGAAGGCCTAGGAAATATGGACCAGACGGAACTGTGTCATTGGCATTGACTCCACCATCGTCTAGTCGTCCTGGAACTGGAACAGTGACACAGAGCCATAAGCGGGGCAGAGGGCGCCCGCCTGGGAGTGGCAAGAAACAGCAGTTGGCTTCTTTTGGTGAGTTGATGTCTGGTTCGGCTGGGATGGGTTTCACTCCTCATATCATCACTATTGCAGTTGGAGAAGATATTGTGTCAAAAATAATGGCATTCTCCCAGCAGGGCTCTAGAGCAGTATGTGTATTGTCAGCCAATGGTGCTGTCTCTAGTGTGACTCTTCGTCAGCCTTCAACTTTAAGTGGTTCCGTCACATATGAGGGGCGTTATGAGATCTTGTGCCTGTCAGGCTCTTACTTGCTTAATGATAGTGGAGGCTCACGCAATCGAAGTGGTGGACTAAGCGTTTCTCTTGCTAGTCCTGAGGGTAAAATCATAGGTGGAGGAGTTGGAGGAATGCTTATTGCAGCATGTCCTGTTCAGGTGATAGTTGGGAGCTTTTTATGGGGTGGATCAAAGGCGAAGAACAAGAAAAAGGAAGGTGAAGAGGTTGCAGTGGAGTCCGATCATCAGGCACAGGCAGTTCATAATCCTGTTGCAATGAATAACATTATGGCTAATCAAAATCTCACCCCTACATCTATTGGTGCCTGGCCTGCATCTTGTACAATGGATATGCGCAATTCCCATGTTGACATTGATTTAATGCGTGGGTGA 1020 0.4804 MDRGDQMALSGSASYYMQRGIAGSAAQPELHGSPSIRPLSNFNLSFQPNIGSGTIGSTLPLESSAISPHGVNVGTPSGVPSGEPVKRKRGRPRKYGPDGTVSLALTPPSSSRPGTGTVTQSHKRGRGRPPGSGKKQQLASFGELMSGSAGMGFTPHIITIAVGEDIVSKIMAFSQQGSRAVCVLSANGAVSSVTLRQPSTLSGSVTYEGRYEILCLSGSYLLNDSGGSRNRSGGLSVSLASPEGKIIGGGVGGMLIAACPVQVIVGSFLWGGSKAKNKKKEGEEVAVESDHQAQAVHNPVAMNNIMANQNLTPTSIGAWPASCTMDMRNSHVDIDLMRG 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere12g0923 339 SMART AT_hook_2 123 135 IPR017956 GO:0003677
Dere12g0923 339 SMART AT_hook_2 86 98 IPR017956 GO:0003677
Dere12g0923 339 SUPERFAMILY AF0104/ALDC/Ptd012-like 153 276 - -
Dere12g0923 339 ProSiteProfiles PPC domain profile profile. 149 289 IPR005175 -
Dere12g0923 339 MobiDBLite consensus disorder prediction 103 122 - -
Dere12g0923 339 Pfam Plants and Prokaryotes Conserved (PCC) domain 155 268 IPR005175 -
Dere12g0923 339 MobiDBLite consensus disorder prediction 61 138 - -
Dere12g0923 339 CDD DUF296 154 268 IPR005175 -
Dere12g0923 339 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 70 304 IPR039605 GO:0003680
Dere12g0923 339 Gene3D - 155 292 - -
Dere12g0923 339 FunFam AT-hook motif nuclear-localized protein 1-like 155 286 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere12g0923 Dere-ChrDere12 17549611 17554143 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere12g0923 1 339 AT-hook Motif Nuclear Localized (AHL) Family AT3G61310 48.493 3.23e-86 262