Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere12g0920 ATGGATCCAGTAGCCGCACAAGGACGTCCTCTTCCACCTCCGTTTCTCACCAGAGATCTTCATCTTCATCCTCACCACCAGTTCCAGTCTCACCATAACAGCAGCAACCACCACCAGAACGCCGACGACGAGCAGACCGGTAATGGCAGTTTGAACCGCGGTCAGAAGCGAGATCGAGATCAGGATAACAACGCCTCTGAGGGTAAAGAATTAGGCTCGTACACAGCTCAGGCTGGAGAAGCCACCGGCGGAACTGGGGAGAACTCTAGAAGGCCTCGTGGCAGGCCTGCAGGTTCGAAGAACAAACCCAAGCCTCCGATCATCATAACCAGAGACAGCGCCAATGCTCTGCGGTCCCACGTCATGGAGATCGCAAACGGCGGCGACATCATGGAGAGCGTGGCCACTTTCGCACGGCGGAGGCAGCGTGGGGTTTGCATTCTGAGCGGCAGCGGCACCGTCACGAATGTCACTCTCCGCCAGCCTGCTTCGCCCGGTGCAGTTGTGACCTTACATGGGAGATTCGAGATTCTATCACTCTCCGGCTCGTTTCTGCCGCCTCCTGCGCCGCCTGCGGCGTCGGGGCTGGCCATATATCTGGCAGGCGGACAGGGTCAGGTAGTCGGAGGCACCGTGGTGGGCCCGTTGTTGGCGTCAGGCCCGGTGGTTATTATGGCTGCGTCGTTCGGTAATGCGGCGTACGAGAGGCTGCCGTTGGAGGAGGAGGATACGCCGGTGCCGGTGCCGGGAAGCGGAGAATTAGGGTCGCCGGGAATTTCAGCACAACAACAATCTCAGCAGCAGCAAATAGTGGGAGATCCTAACACATCGCTGTTTCATGGAGTGCCTCAGAATCTCCTGAATTCATGTCAATTACCACCTGAAGGTTACTGGGGTGGAGGCAGTGTTCGTCCTCCATTTTAA 924 0.5768 MDPVAAQGRPLPPPFLTRDLHLHPHHQFQSHHNSSNHHQNADDEQTGNGSLNRGQKRDRDQDNNASEGKELGSYTAQAGEATGGTGENSRRPRGRPAGSKNKPKPPIIITRDSANALRSHVMEIANGGDIMESVATFARRRQRGVCILSGSGTVTNVTLRQPASPGAVVTLHGRFEILSLSGSFLPPPAPPAASGLAIYLAGGQGQVVGGTVVGPLLASGPVVIMAASFGNAAYERLPLEEEDTPVPVPGSGELGSPGISAQQQSQQQQIVGDPNTSLFHGVPQNLLNSCQLPPEGYWGGGSVRPPF 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere12g0920 307 SUPERFAMILY AF0104/ALDC/Ptd012-like 114 250 - -
Dere12g0920 307 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 40 272 IPR014476 GO:0003680
Dere12g0920 307 MobiDBLite consensus disorder prediction 256 270 - -
Dere12g0920 307 Pfam Plants and Prokaryotes Conserved (PCC) domain 118 230 IPR005175 -
Dere12g0920 307 ProSiteProfiles PPC domain profile profile. 114 250 IPR005175 -
Dere12g0920 307 CDD DUF296 118 185 IPR005175 -
Dere12g0920 307 PIRSF ESCAROLA 17 305 IPR014476 GO:0003680
Dere12g0920 307 Gene3D - 117 245 - -
Dere12g0920 307 MobiDBLite consensus disorder prediction 1 108 - -
Dere12g0920 307 FunFam AT-hook motif nuclear-localized protein 117 244 - -
Dere12g0920 307 MobiDBLite consensus disorder prediction 242 270 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere12g0920 Dere-ChrDere12 17455726 17456649 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere12g0920 1 307 AT-hook Motif Nuclear Localized (AHL) Family AT2G45430 62.229 5.64e-91 271