Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Dere12g0912 | ATGATAGCGCGATGCCCGGTGGTGTTGTATTTCATCTTGGAGAAGAGAATCAAGACCAGATGCTTAGTTGTTCAGTTGCCATTACTGCCACTTCCCAATTTCTCTGAAACGTTCCTTCGCATTTCACTTCTGAATCACCAAACGAAATCCCCTTTGATCAAAACCGAACCTTTTGAAATGGTTTCCCAAAATCAACCCAAAGAAGACATCCCAAAGAGGCAATGGTCATTGCGAGACTTCGAGATCGGAAAACCACTTGGAAAAGGGAAATTCGGTAGGGTCTACGTCGCTAGAGAGGTCAAGAGCAAATATATTGTTGCGTTGAAGGTTATCTTTAAGGAACAACTTGAGAAGTACAGGATTATTCATCAGCTGAGGAGAGAGATGGAGATTCAGACCAGCCTTCAGCACCCAAACATTCTGCGTCTCTATGGTTGGTTTCATGATGCTGAACGTGTCTTCTTGATACTTGAATATGCTCATAATGGTGAGCTTTACAAGGAGCTCAGAAAAAAAGGTCATCTCACTGAGAAGCAAGCAGCCACGTATATTTTGAGCCTCACAAAAGCGTTAGCATATTGTCATGAGAAGCATGTGATTCATAGGGATATCAAGCCCGAGAATTTGTTACTTGACCATGAGGGTCGCCTTAAAATTGCAGACTTTGGTTGGTCTGTGCAGTCAAGAAGTAAGAGACATACCATGTGCGGAACATTGGATTATTTAGCACCAGAAATGGTAGAAAACAAAGAACATGATTTTGCTGTTGATAACTGGACTTTGGGTATACTTTGTTATGAGTTCCTCTATGGTTCTCCCCCATTTGAGGCCGAGAGTCAAGTTGATACCTTCAAAAGGATAATGAAGATTGACCTCAACTTTCCTTCTAGTCCTATTGTTTCTTCAGAAGCCAAAAATCTGATTAGCCGACTTCTGGTGAAAGACTCCACTAGAAGGCTATCACTTCAGAAGATAATGGAGCATCCTTGGATACTCAAGAATGCTGATCCTTTGGGTATCTGCAATAAGTAG | 1032 | 0.4186 | MIARCPVVLYFILEKRIKTRCLVVQLPLLPLPNFSETFLRISLLNHQTKSPLIKTEPFEMVSQNQPKEDIPKRQWSLRDFEIGKPLGKGKFGRVYVAREVKSKYIVALKVIFKEQLEKYRIIHQLRREMEIQTSLQHPNILRLYGWFHDAERVFLILEYAHNGELYKELRKKGHLTEKQAATYILSLTKALAYCHEKHVIHRDIKPENLLLDHEGRLKIADFGWSVQSRSKRHTMCGTLDYLAPEMVENKEHDFAVDNWTLGILCYEFLYGSPPFEAESQVDTFKRIMKIDLNFPSSPIVSSEAKNLISRLLVKDSTRRLSLQKIMEHPWILKNADPLGICNK | 343 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Dere12g0912 | 343 | FunFam | Serine/threonine-protein kinase ark1 | 72 | 340 | - | - | |
| Dere12g0912 | 343 | CDD | STKc_Aurora | 79 | 332 | - | - | |
| Dere12g0912 | 343 | Pfam | Protein kinase domain | 80 | 331 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
| Dere12g0912 | 343 | Gene3D | Transferase(Phosphotransferase) domain 1 | 164 | 339 | - | - | |
| Dere12g0912 | 343 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 199 | 211 | IPR008271 | GO:0004672|GO:0006468 | |
| Dere12g0912 | 343 | PANTHER | SERINE/THREONINE-PROTEIN KINASE IAL-RELATED | 58 | 339 | IPR030616 | GO:0004672 | |
| Dere12g0912 | 343 | ProSitePatterns | Protein kinases ATP-binding region signature. | 86 | 113 | IPR017441 | GO:0005524 | |
| Dere12g0912 | 343 | SUPERFAMILY | Protein kinase-like (PK-like) | 60 | 335 | IPR011009 | - | |
| Dere12g0912 | 343 | FunFam | Aurora kinase A | 72 | 163 | - | - | |
| Dere12g0912 | 343 | SMART | serkin_6 | 80 | 331 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
| Dere12g0912 | 343 | ProSiteProfiles | Protein kinase domain profile. | 80 | 331 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
| Dere12g0912 | 343 | Gene3D | Phosphorylase Kinase; domain 1 | 69 | 163 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Dere12g0912 | Dere-ChrDere12 | 17309292 | 17315839 | Dispersed/Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Dere12g0912 | 80 | 337 | CBL-interacting serine-threonine protein kinases | AT5G10930 | 41.132 | 2.27e-62 | 203 |
Transcription factors information