Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere12g0909 ATGGAAGGCGTATCCAATGAACGAGTCGCTTACAAGCTCAAAGGGTACTTCGATTTGGCCAAGGAAGAGATTGCCAAAGGTGTTAGGGCCGAAGAGTGGGGCTTGGTCGATGATGCTGTTCTTCATTACAAGAATGCCCAGCGGATTTTGATTGAAGCCAGTTCAACTACCGTGCCTTCCTTTATCACTTCCAGTGAACAAGAGAAGGTGAAATCATATCGTCAAAAAATATCAAAATGGCAGGGTCAAGTTTCTGAGAGATTACGGATTCTAAGTAGACGAGCAGGTAGCACGTCTACTAATCAGAGAATCTCAACTCATGGGCAAACTGCTGCAGTTCCATTTAATCCATCAAATGCTAGAAAAAGTGCGTTGCAAATGAATTATCAAAGAACAATTACCACGGATAAAGATGTAAGCCTGAAATCTAGTCGAGCATCTGGTGGAGATTATGATGCAAAATTAGTTGAAACAATTAACACTGCCATAGTAGATAGAAGCCCTTCTGTTAGATGGGAAGATGTTGCTGGTCTAGAAAAGGCAAAGCAAGCTTTAATGGAAATGGTTATTTTGCCAACTAAGAGAAGAGACCTGTTCACGGGTCTTCGAAGGCCCGCTAGAGGTTTGCTTCTCTTTGGTCCACCTGGTAATGGAAAAACTATGCTTGCCAAAGCAGTGGCTTCAGAATCAGAAGCAACATTCTTTAACGTATCTGCAGCATCGTTGACATCAAAATGGGTTGGTGAAGGTGAAAAGCTTGTCCGGACTCTATTCATGGTAGCTATTTCCAGGCAACCATCTGTGATTTTCATTGATGAGATTGACAGTATCATGTCAACAAGGTTGGCTAATGAGAATGATGCAAGCAGACGATTAAAATCTGAATTCCTTATTCAGTTTGATGGGGTGACCTCCAATCCTAATGATGTTGTAATTGTCATTGGTGCTACCAATAAGCCACAAGAATTGGATGATGCAGTTCTTCGGAGATTGGTGAAAAGAATATACATACCTTTACCAGATGAAAATGTTCAGAGACTTCTACTAAAACACAAACTCAAGGGTCAAGCATTCTCCTTACCTAGCAGAGATCTAGAAAGGCTTGTTAAAGATACAGAAGGATATTCTGGAAGTGATCTACAAGCGTTGTGTGAAGAAGCAGCAATGATGCCGATTAGAGAGCTGGGTTCGGACATTCTTACTGTTAAGGCAAATCAGGTAAGAGGACTGAGATATGAGGATTTTAAGAATGCAATGGCTGTCATCAGACCCAGTTTAAACAAAAGCAAGTGGGAAGAGCTTGAGCGGTGGAATGAGGAGTTTGGCTCTAATTGA 1335 0.4157 MEGVSNERVAYKLKGYFDLAKEEIAKGVRAEEWGLVDDAVLHYKNAQRILIEASSTTVPSFITSSEQEKVKSYRQKISKWQGQVSERLRILSRRAGSTSTNQRISTHGQTAAVPFNPSNARKSALQMNYQRTITTDKDVSLKSSRASGGDYDAKLVETINTAIVDRSPSVRWEDVAGLEKAKQALMEMVILPTKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESEATFFNVSAASLTSKWVGEGEKLVRTLFMVAISRQPSVIFIDEIDSIMSTRLANENDASRRLKSEFLIQFDGVTSNPNDVVIVIGATNKPQELDDAVLRRLVKRIYIPLPDENVQRLLLKHKLKGQAFSLPSRDLERLVKDTEGYSGSDLQALCEEAAMMPIRELGSDILTVKANQVRGLRYEDFKNAMAVIRPSLNKSKWEELERWNEEFGSN 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere12g0909 444 CDD MIT_spastin 13 91 - -
Dere12g0909 444 Pfam ATPase family associated with various cellular activities (AAA) 209 339 IPR003959 GO:0005524|GO:0016887
Dere12g0909 444 Gene3D - 340 422 - -
Dere12g0909 444 Gene3D - 5 95 - -
Dere12g0909 444 ProSitePatterns AAA-protein family signature. 311 330 IPR003960 GO:0005524|GO:0016887
Dere12g0909 444 MobiDBLite consensus disorder prediction 95 116 - -
Dere12g0909 444 SMART smart 13 90 IPR007330 -
Dere12g0909 444 CDD RecA-like_spastin 174 337 - -
Dere12g0909 444 PANTHER AAA DOMAIN-CONTAINING 66 443 - -
Dere12g0909 444 Gene3D - 168 438 IPR027417 -
Dere12g0909 444 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 168 441 IPR027417 -
Dere12g0909 444 SMART AAA_5 205 341 IPR003593 GO:0016887
Dere12g0909 444 FunFam Spastin, putative 168 352 - -
Dere12g0909 444 FunFam AAA-type ATPase family protein 340 422 - -
Dere12g0909 444 FunFam AAA-type ATPase family protein 6 95 - -
Dere12g0909 444 Pfam AAA+ lid domain 364 395 IPR041569 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere12g0909 Dere-ChrDere12 17235218 17243057 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere12g0909 168 394 Calmodulin-binding Proteins AT3G56690 42.373 2.89e-47 172