Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere12g0892 ATGGGTAGAGGGAGAGTTGAACTGAAGAGGATAGAGAACAAAATCAATAGGCAAGTGACTTTCTCAAAAAGAAGGAACGGTTTGCTGAAGAAAGCTTATGAACTGTCAGTGCTTTGTGATGCTGAGGTTGCTCTCATCATTTTCTCTGGTCGTGGCAAGCTCTATGAATTCGGAAGTGCTGGAATTACCAAAACCCTTGAACGATACCAGAGGTGCTCTTTCACTCCTCAAGACACCAACGTTGTTGAGCTTGAAACCCAGAGCTGGTGCCAAGAGGTGTCAAAGCTTAAGGCAAAGTATGAATCTCTTCAGAGGACTCAAAGGCATTTGCTTGGGGAAGATCTTGGACCATTGAATGTGAAAGAGCTGCAAAATCTTGAGAAGCAGCTAGAAGGAGCTCTAGCACAAGCTAGGCAAAGGAAGACACAAATTATGATTGAACAAATGGAAGATCTTCGCAGAAAGGAACGCCATCTAGGGGACATCAATAGGGAACTCAGACTCAAGCTTGAAGCAGAAGGATATAATCTTAAAGCCATTGAAAGCTTGTGGAGCTCTAATTCTGCAGCTGCCAATAGCAGCTTTCCCATGCAATCTTCACATCAAACCAACCCTATGGAGTGCCAAGCTGAACCTTTCTTGCAAATAGGGTACCATCATCAGTATGTTCAGGCAGAGACATCTAATGTTTCCAAGAGCATGGGTCCTGAAACTAACTTCATGCACGGATGGGTTCTTTGA 741 0.4399 MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSGRGKLYEFGSAGITKTLERYQRCSFTPQDTNVVELETQSWCQEVSKLKAKYESLQRTQRHLLGEDLGPLNVKELQNLEKQLEGALAQARQRKTQIMIEQMEDLRRKERHLGDINRELRLKLEAEGYNLKAIESLWSSNSAAANSSFPMQSSHQTNPMECQAEPFLQIGYHHQYVQAETSNVSKSMGPETNFMHGWVL 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere12g0892 246 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Dere12g0892 246 FunFam MADS-box transcription factor 1 13 87 - -
Dere12g0892 246 CDD MADS_MEF2_like 2 73 IPR033896 GO:0000977|GO:0045944
Dere12g0892 246 Gene3D - 13 83 IPR036879 GO:0003677|GO:0046983
Dere12g0892 246 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 193 - -
Dere12g0892 246 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Dere12g0892 246 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Dere12g0892 246 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Dere12g0892 246 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Dere12g0892 246 Coils Coil 120 143 - -
Dere12g0892 246 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Dere12g0892 246 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Dere12g0892 246 Pfam K-box region 85 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Dere12g0892 246 SUPERFAMILY SRF-like 2 89 IPR036879 GO:0003677|GO:0046983
Dere12g0892 246 ProSiteProfiles K-box domain profile. 86 176 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere12g0892 Dere-ChrDere12 16872572 16879572 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere12g0892 1 246 MADS-box Gene Family AT2G45650 66.403 3.49e-118 336
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Dere12g0892 K-box 6.4e-31 No_clan