Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere12g0891 ATGGTAAGAGGGAAGACTCAGATGAGGCGTATAGAGAACGCCACGAGCAGGCAAGTGACCTTCTCAAAGCGCCGTAATGGGCTGCTGAAGAAGGCCTTTGAACTCTCAGTTCTTTGTGATGCTGAGGTTGCTCTCATCATATTCTCCCCCAGAGGCAAGCTTTATGAATTTGCTAGCTCCAGCTTGCACGGGACAATAGAACGCTACCGCAGGCATACCAAGGATACTCAAACAGCCGACAGATCATTTGAACAAAATATGCAGCATTTGAAGCAAGAAGCAGCAAGCATGATGAAGAAAATTGAGCTTCTTGAAGTTTCAAAACGGAAACTCTTGGGAGAAGGTTTAGGGTCATGCTCCTTAGATGAGTTGCAACAGATAGAACAACAGTTGGAGAAGAGCGTAAGCAGCGTTCGTGCAAGAAAGACTCAGGTTTACAAGGAACAAATCGAGCAACTAAAAGCAAAGGAAAAAGCCCTAGAAGCTGAAAATGCAAGGCTCTCTGAGAAGTGTGGTATGCGGCCACAAGAAGCAACAATTGGTGAGCAGAAAGAAAGCCAAGCTTATGCAGAAAGTAGCCCAAGTTCAGATGTGGAAACTGAGTTGTTCATTGGACTACCAGAAACAAGAACAAGACGTATTCTTCCTCCTCGTCCTCCTCCAAGGTCTAATAATTGA 678 0.4513 MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFASSSLHGTIERYRRHTKDTQTADRSFEQNMQHLKQEAASMMKKIELLEVSKRKLLGEGLGSCSLDELQQIEQQLEKSVSSVRARKTQVYKEQIEQLKAKEKALEAENARLSEKCGMRPQEATIGEQKESQAYAESSPSSDVETELFIGLPETRTRRILPPRPPPRSNN 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere12g0891 225 Coils Coil 121 141 - -
Dere12g0891 225 SUPERFAMILY SRF-like 3 77 IPR036879 GO:0003677|GO:0046983
Dere12g0891 225 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 177 - -
Dere12g0891 225 CDD MADS_MEF2_like 3 78 IPR033896 GO:0000977|GO:0045944
Dere12g0891 225 MobiDBLite consensus disorder prediction 166 225 - -
Dere12g0891 225 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Dere12g0891 225 Coils Coil 143 170 - -
Dere12g0891 225 Coils Coil 87 107 - -
Dere12g0891 225 MobiDBLite consensus disorder prediction 180 199 - -
Dere12g0891 225 Pfam K-box region 85 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Dere12g0891 225 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Dere12g0891 225 Gene3D - 14 104 IPR036879 GO:0003677|GO:0046983
Dere12g0891 225 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Dere12g0891 225 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Dere12g0891 225 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Dere12g0891 225 FunFam MADS-box protein SOC1 14 95 - -
Dere12g0891 225 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Dere12g0891 225 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Dere12g0891 225 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere12g0891 Dere-ChrDere12 16850701 16868292 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere12g0891 1 158 MADS-box Gene Family AT2G45660 79.747 2.25e-88 256
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Dere12g0891 K-box 2.6e-28 No_clan