Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere12g0886 ATGGATGGCTATGGGTCTTCATCTCCATACCGTTATCCCAACCCATATTCGTCGTACACACATGCTTCTCCTCCTTCATACCATCCACCTTCAGTTTCAGATCCATATTTACCTCCTTCTACATACCCATACCCATTTAGTCATCCTTCACAACCCTTTAGCTGTGTCTACCATCCTCACCCACCACCACCACCACGTTCTCCTCCTCCTCCAGGTGCTTCAGGTTCACTGCCACCCTCGTCTTCTCATCCTTGTCCCTTAGATCATAGTCGGCTTCCTCCAGTCTCCTATTTTGGTCTTCCTCCTTACCCTTACTTTCCCCACCAAGTTCATCCGCCCATCCATAATATTAGTCCTCCTCAACCTTCCCTTTTATTCCCTAGTTATGATCACTATTCTATAGTCGAGGCACATCCACCTCTTGAAGTAAAGACCCGAACACATTCACGAGCCTATAGCTATGCTGGTCCTTATGAGCCATCGAGTAAGAGCTTGCTAGAAGGTGGTCAGTCGTCGTTGCAGACCAATGATGCTTCCAACACTCCACATAAGTGTGTTAACCCACTACCTTTGGATAATGCTCGATTTCCCAATAGCCGTCAATCTTCTCCTAAATCCTCCGTACAGCAGTCGTTCAAGAGTTCGATTTCAATTGCAAACCATGAAAGTAGACAAGAGGATTTTTATTTCCACCGTCGGAACTCATTCTCAGGTTGGGGATCTGGCCACTTTAATATGATGGATTCTCATTCTTCTAAAGTTCAAACTCATTCAGGTTCATTTAGTGAAATTACACTTACTCAGAATCCAGAGATTGTTCCTGCCCCAACTAAAGGGTCCTCGAAAATCTTACTCCTACATGGGAATTTAGATATATGGGTTTACAGAGCCAAAAATCTTCCAAATATGGATTACTTCCACAAGACTTTAGGGGGGATGTTATGTAAATTCCCCGGGAGCATGGAAGGAAAAATGACTAGTGATCCTTATGTAATAATTTCAGTATCAAATGCCATAATTGGGAGGACTTTTGTGATTAACAACTGTGAAAATCCTAATTGGATGCAACATTTTAATGTTCCCATTGCCCACTACGCTACTGAAGTGCACTTTCTTGTTAAAGATAGTGATATTGTGGGTTCACAGATTATTGGCAATGTGGCAATTCCAGTGGAACAAATTTACTCGGGAGAAAAAGTGGAAGGTACCTACCCTATCCTGAATACTAGTGGGAGGCCATATAAGCAAGGTGCTACCTTGACCTTATCCATTCAGTACATTCCAATCGAGAAATTGAGCTATCATTATCAAGGAGTAAGTGCAGGGCCTAATTGCACTGGGGTTTCAGGTACATATTTTCCTCTTAGGAAGGGTGGAACTGTTAATCTATATCAAGATGCCCATGTTCCAGATGGTTCACTACCTCTTGTGATGCTTGACCGAGGGAAGTATTATGTTCATGGAAAGTGTTGGCATGATATCTTCAATGCCATACACCAAGCCCGTCGTTTGATTTATATCACAGGGTGGTCAGTGTGGCACAAAGTCAAATTGGTAAGGGATGCTGGTTATCCATCAGATTACACCCTAGGTGATCTTTTGAAGTCAAAATCACAGGAAGGAGTGAGAGTGCTTCTCCTTATTTGGGATGACCCTACATCAAGGAAAATTTTTGGTTACAAAACTGGAGGTGTCATGGCAACTCATGATGAGGAAACTAGACATTTTTTCAAACACTCTTCCGTTCAGGTGCTGCTTTGTCCTCGAATTGCTGGAAAACGACATAGCTGGTACAAGCAAAAGGAAGTTGGAACGATATATACACATCATCAGAAAACTATTATTGTGGATGCTGATGCTGGAAATAACAAAAGAAAAATTATAGCATTTGTTGGTGGACTTGATTTGTGTGATGGGCGATATGATTTTCCCCACCATCCACTTTTTAGGACACTCCAAACACTGCATAAGGATGACTATCACAACCCCACTTTCACGGGTAATACTGGTGGTTGTCCACGGGAGCCATGGCATGACTTGCATTCTAAAATTGATGGTCCAGCAGCTTATGATGTTCTAAACAACTTTGAGGAGCGTTGGTTAAAAGCCGCAAAACCTCATGGGATTAATAAATTGAAAGCTTCCTATGATGATGCTTTGCTTAAGCTAGAAAGACTTCCAGACATTGTTAGTGTGACAGATATTAGCAGTGTAGATGATAATGATCTCGATGCTTGGCATGTTCAGATATTTAGGTCAATTGATTCAAATTCTGTTAAGGGATTTCCAAAGGATCCAAAACTTGCATCGAAAAAGAACCTAGTATGCGGGAAGAATTTATTGATTGACATGAGCATACATACAGCGTATGTGAAGGCCATTCGTGCTGCACAACATTACATTTATATAGAGAATCAATATTTCATTGGCTCTTCGTACAATTGGAATCACTATAAAGCCCTAGGTGCTAATAACCTTATTCCAATGGAAATTGCCCTTAAGATTGCTGCAAAGATAAAGGCAAATGAGAGATTTGCAGTATATATTATCATACCAATGTGGCCAGAGGGTGTTCCAACTGGAGCTGCTGCACAGAGGATTTTATTTTGGCAGCAAAAAACAATGCAAATGATGTATGAGACAATTTCAAAGGCTTTGGTTGAGGCTGGGCTAGAGGAAGCATTCTCTCCACAAGATTATTTGAACTTTTTCTGTCTTGGCAATCGCGAGATCATAAATATGTATGATTATAATAGTATGCTTGGAACTCCTCCTCCAGCAAATAGTCCTCAAGCATTTAGTCGAAATAGTCGTCGTTTCATGATTTATGTTCATTCAAAGGGCATGATAGTTGATGATGAATATGTGATATTGGGGTCTGCAAACATCAACCAACGTTCTATGGAAGGAACAAGAGACACTGAGATTGCAATGGGAGCCTACCAACCTCATTATACATGGGCAAGACAACGTTCATATCCACGTGGAGAGATCCATGGATATAGGATGTCACTTTGGGCTGAACATACAGGAACACTTGAAGAGTGCTTCTTGCAGCCAGAGAGCCTTGATTGTGTAAGAAGGATTAGAGCAATGGCTGAAATGAATTGGATTCAATTTGCAGCAAATGAAATAACAGATATCAGAGGGCACTTGCTCAAGTACCCAGTTGAAGTTGATCGAAGGGGTAAGGTTAGATCCCTTCCCGGCCATGAAGAGTTCCCTGATGTGGGAGGGAAAATAGTGGGATCATTCCTTGCCATTCAGGAGAATCTAACTATATGA 3285 0.4155 MDGYGSSSPYRYPNPYSSYTHASPPSYHPPSVSDPYLPPSTYPYPFSHPSQPFSCVYHPHPPPPPRSPPPPGASGSLPPSSSHPCPLDHSRLPPVSYFGLPPYPYFPHQVHPPIHNISPPQPSLLFPSYDHYSIVEAHPPLEVKTRTHSRAYSYAGPYEPSSKSLLEGGQSSLQTNDASNTPHKCVNPLPLDNARFPNSRQSSPKSSVQQSFKSSISIANHESRQEDFYFHRRNSFSGWGSGHFNMMDSHSSKVQTHSGSFSEITLTQNPEIVPAPTKGSSKILLLHGNLDIWVYRAKNLPNMDYFHKTLGGMLCKFPGSMEGKMTSDPYVIISVSNAIIGRTFVINNCENPNWMQHFNVPIAHYATEVHFLVKDSDIVGSQIIGNVAIPVEQIYSGEKVEGTYPILNTSGRPYKQGATLTLSIQYIPIEKLSYHYQGVSAGPNCTGVSGTYFPLRKGGTVNLYQDAHVPDGSLPLVMLDRGKYYVHGKCWHDIFNAIHQARRLIYITGWSVWHKVKLVRDAGYPSDYTLGDLLKSKSQEGVRVLLLIWDDPTSRKIFGYKTGGVMATHDEETRHFFKHSSVQVLLCPRIAGKRHSWYKQKEVGTIYTHHQKTIIVDADAGNNKRKIIAFVGGLDLCDGRYDFPHHPLFRTLQTLHKDDYHNPTFTGNTGGCPREPWHDLHSKIDGPAAYDVLNNFEERWLKAAKPHGINKLKASYDDALLKLERLPDIVSVTDISSVDDNDLDAWHVQIFRSIDSNSVKGFPKDPKLASKKNLVCGKNLLIDMSIHTAYVKAIRAAQHYIYIENQYFIGSSYNWNHYKALGANNLIPMEIALKIAAKIKANERFAVYIIIPMWPEGVPTGAAAQRILFWQQKTMQMMYETISKALVEAGLEEAFSPQDYLNFFCLGNREIINMYDYNSMLGTPPPANSPQAFSRNSRRFMIYVHSKGMIVDDEYVILGSANINQRSMEGTRDTEIAMGAYQPHYTWARQRSYPRGEIHGYRMSLWAEHTGTLEECFLQPESLDCVRRIRAMAEMNWIQFAANEITDIRGHLLKYPVEVDRRGKVRSLPGHEEFPDVGGKIVGSFLAIQENLTI 1094
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere12g0886 1094 SMART pld_4 940 967 IPR001736 GO:0003824
Dere12g0886 1094 SMART pld_4 605 640 IPR001736 GO:0003824
Dere12g0886 1094 ProSiteProfiles C2 domain profile. 268 404 IPR000008 -
Dere12g0886 1094 MobiDBLite consensus disorder prediction 194 215 - -
Dere12g0886 1094 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 605 640 IPR001736 GO:0003824
Dere12g0886 1094 Pfam Phospholipase D C terminal 1014 1084 IPR024632 -
Dere12g0886 1094 SUPERFAMILY Phospholipase D/nuclease 786 1026 - -
Dere12g0886 1094 FunFam Phospholipase D 753 986 - -
Dere12g0886 1094 PANTHER PHOSPHOLIPASE D 280 1085 IPR015679 -
Dere12g0886 1094 MobiDBLite consensus disorder prediction 154 215 - -
Dere12g0886 1094 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 940 967 IPR001736 GO:0003824
Dere12g0886 1094 MobiDBLite consensus disorder prediction 164 183 - -
Dere12g0886 1094 MobiDBLite consensus disorder prediction 57 77 - -
Dere12g0886 1094 Gene3D Endonuclease Chain A 757 993 - -
Dere12g0886 1094 Pfam Phospholipase D Active site motif 941 967 IPR001736 GO:0003824
Dere12g0886 1094 Pfam Phospholipase D Active site motif 606 640 IPR001736 GO:0003824
Dere12g0886 1094 Gene3D C2 domain 283 423 IPR035892 -
Dere12g0886 1094 SUPERFAMILY Phospholipase D/nuclease 475 704 - -
Dere12g0886 1094 MobiDBLite consensus disorder prediction 57 86 - -
Dere12g0886 1094 Pfam C2 domain 288 406 IPR000008 -
Dere12g0886 1094 CDD C2_plant_PLD 284 427 - -
Dere12g0886 1094 Gene3D Endonuclease Chain A 482 722 - -
Dere12g0886 1094 SMART C2_3c 289 403 IPR000008 -
Dere12g0886 1094 FunFam Phospholipase D delta 481 719 - -
Dere12g0886 1094 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 286 429 IPR035892 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere12g0886 Dere-ChrDere12 16725889 16735864 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere12g0886 80 1094 Phospholipase D Gene Family (Wang group) AT2G42010 65.283 0.0 1349