Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere12g0874 ATGGGGGTGGGAGGAAATTTCTGGGATTTGCTAAAGCCATATGCGCGAGCCGAAGGTTTCGATTTCTTGAGGAACAAGCGAGTTGCAGTGGACCTTTCCTTCTGGATTGTACAGCATGAGAATGCCATCAAGGCCCATGCTCGGAATCCTCACCTACGCCTCACCTTCTTGCGCACCATCAATCTCTTCTCCAAGTTTGGAGCATTTCCAGTCTTCATTGTGGATGGGACACCATCGCGGTTGAAATCCCAAGCCAGGATTACAAGATTTTTTCGTTCTTCTTGCATTGAACTAACAGATTTTGCGATAGCTGAAGAAGGTGTTCCAGTTGAGAGAAACCGTGCATTTTCAAGACGTGTACAAGAATGTGTGGAACTTGTTGAGCTACTTGGAATGCCTGTACTAACTGCTAAAGGAGAGGCAGAAGCACTCTGTGCCCAATTAAATAGTGAAGGTTATGTAGATGCTTGCATCACAGCTGACAGTGATGCATTCCTCTTTGGCGCTAAATGCATTATAAAAAGCTTCTGCCCCAACTCCAAAGAACCGTTTGAATGCTACAATATGTCAGATATTGAAGCTGGTCTTGGGTTGAAGAGGAAGCACTTAATAGCTATTTCTCTTCTTGTTGGAAATGATCATGATTTAAAGGGCGTTCAAGGGATTGGGCTTGATACAGCTCTTCGTTTTGTCAAATTTTTTAGTGAAGAAGAGGTATTAGATAGATTGCATGAGATAGGCAATGGGAAAGTTTTACCAGTTCTCAGTAGCATTAAATCTGCAGACAATTGTGCTGACATGGATGGGAACTCTCCAAGCAGAAAACAACTTCATTGTTCCTTCTGTGGGCATCCAGGCAGCAAAAGAGATCATTTAAAATTTTCCTGTGAATATTGCATTACAAATGATGATGATGGTTGCATGAGAAAACCAGAGGGTTTTAGTTGTGGCTGCCCTTCCTGTGATATGATTAGAAAACAAAAGGAGAAGAAAAGGCTGGAAATTTGGTATGAAAAGATTTTTCACAAGATTGCAGAGGAGCCAAAGTTTCCCAGAGTTGGAATCATTGAAATGTATTTATGTGATGACAATGGTTGCTTTGCTGCAAGTGATGGTCCTTGCCTCTCATGGAGAAGACCCGAAATTGAGATGGTGATAGACTTCTTAAAATTTCATCTGCACTGGGATCCATCTTATGTTCGACGGCTGATTTTTCCTATGATGTCTACCATTTTTTTGAGAGATATGGTTAGTAGTCCTGGAGACAGTTTGTTATTTGGGAAATATGAGTTTGATTCAATCAAACGTGTGAAGATAAGATATGGATATCAATTTTATGTTGTCAAGTGGAAATGTTTAGTGGGCAACATCACTTGCACAATTCCATCTCATGAATCTTACATGCAACATGAAGATGGTAGTGAGCTTGAAGAATTTGTAGATCTACTGGATGACTCTGATGTTCCTGATATTCAAGCAGGTGATGGATGTAGCTTTCTGTTGACAGATGAAAGTATTGAGCTTGTGAGGGCTGCTTTTCCAGCAGAAGTTGAAAGGTTTCGGCAGGAACAGGAACTGAAGGAATTGAAAATAAGGAAGAATTCAAACCGAAGATCTCAACAGAATGAAAGTTCATCATCATTAAACTCAAGAAGTATTCAGCTAAACATTACAGAGTTCTACCGTTCAGCCAAAATGCAAAATCATTCAAAACCAGAAGAGCTATCTGAGAACTCTGATAACCTTGGCAGTGCGACCTCAAAAGGAAAGAGATTAGCATCAGGCCCAAATCTTACAAAATCTGTGAGGCGTCGCCTTTTATTTAACTAG 1830 0.4066 MGVGGNFWDLLKPYARAEGFDFLRNKRVAVDLSFWIVQHENAIKAHARNPHLRLTFLRTINLFSKFGAFPVFIVDGTPSRLKSQARITRFFRSSCIELTDFAIAEEGVPVERNRAFSRRVQECVELVELLGMPVLTAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCIIKSFCPNSKEPFECYNMSDIEAGLGLKRKHLIAISLLVGNDHDLKGVQGIGLDTALRFVKFFSEEEVLDRLHEIGNGKVLPVLSSIKSADNCADMDGNSPSRKQLHCSFCGHPGSKRDHLKFSCEYCITNDDDGCMRKPEGFSCGCPSCDMIRKQKEKKRLEIWYEKIFHKIAEEPKFPRVGIIEMYLCDDNGCFAASDGPCLSWRRPEIEMVIDFLKFHLHWDPSYVRRLIFPMMSTIFLRDMVSSPGDSLLFGKYEFDSIKRVKIRYGYQFYVVKWKCLVGNITCTIPSHESYMQHEDGSELEEFVDLLDDSDVPDIQAGDGCSFLLTDESIELVRAAFPAEVERFRQEQELKELKIRKNSNRRSQQNESSSSLNSRSIQLNITEFYRSAKMQNHSKPEELSENSDNLGSATSKGKRLASGPNLTKSVRRRLLFN 609
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere12g0874 609 MobiDBLite consensus disorder prediction 566 596 - -
Dere12g0874 609 Pfam XPG I-region 131 213 IPR006086 GO:0004518
Dere12g0874 609 SUPERFAMILY PIN domain-like 6 213 IPR029060 -
Dere12g0874 609 FunFam Flap endonuclease GEN-like 1 198 253 - -
Dere12g0874 609 Gene3D - 198 261 - -
Dere12g0874 609 MobiDBLite consensus disorder prediction 577 594 - -
Dere12g0874 609 SMART xpgn3 1 96 IPR006085 GO:0004518
Dere12g0874 609 FunFam Flap endonuclease GEN-like 1 2 197 - -
Dere12g0874 609 MobiDBLite consensus disorder prediction 531 550 - -
Dere12g0874 609 SMART xpgineu 128 198 IPR006086 GO:0004518
Dere12g0874 609 Pfam XPG N-terminal domain 1 89 IPR006085 GO:0004518
Dere12g0874 609 CDD PIN_GEN1 2 202 - -
Dere12g0874 609 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 203 218 IPR006084 -
Dere12g0874 609 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 148 168 IPR006084 -
Dere12g0874 609 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 25 39 IPR006084 -
Dere12g0874 609 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 70 89 IPR006084 -
Dere12g0874 609 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 127 144 IPR006084 -
Dere12g0874 609 Gene3D - 3 197 - -
Dere12g0874 609 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 198 414 IPR036279 -
Dere12g0874 609 PANTHER FLAP ENDONUCLEASE FAMILY MEMBER 1 553 IPR006084 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere12g0874 Dere-ChrDere12 16451975 16459197 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere12g0874 16 245 Core DNA Replication Machinery Family AT5G26680 28.685 7.99e-17 81.3