Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere12g0868 ATGTTGGGTTCGAATACCAATTTGGTAACCACGGTTATTGGATTTGGTATGAGTGCGACTTTTATAGTATTTGTCTGCACAAGAATAATCTGTGGAAGATTGCGAGGGTCCGCCGAATCTCAGAATATGTTTGAATTTGAACCAAGGATGGATATGGAACAGCCAGAACATGTTAACCATCCTGAACCTGTTCTTGTTACTGCAATTCCCACTATGAAGTTCAACCAAGAGGCTTTCAGTTCTATTGAAGATACACAGTGCGTGATATGTTTGGCAGAGTACAAAGAAAGAGAGGTACTGCGCATCATGCCAAAATGTGGCCACAGCTTCCATCTTTCTTGCATCGATATGTGGCTGAGGAAACAATCCACCTGCCCAGTATGCCGTTTGCCCTTGCAGAATTCTTCTGAAACAAAGCATGTGAGGCCAGTAACATTTAACTTGGGGCAAGGTGAGTCTCAGACTTCTGAAAGGAGAGACAGTGAGAGGCATGCTGAACCAGATTTTGGTAATCCCTTACAATCAGCTTCCACAGAACCAGAAACAAGGCAATGA 555 0.4342 MLGSNTNLVTTVIGFGMSATFIVFVCTRIICGRLRGSAESQNMFEFEPRMDMEQPEHVNHPEPVLVTAIPTMKFNQEAFSSIEDTQCVICLAEYKEREVLRIMPKCGHSFHLSCIDMWLRKQSTCPVCRLPLQNSSETKHVRPVTFNLGQGESQTSERRDSERHAEPDFGNPLQSASTEPETRQ 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere12g0868 184 Pfam Ring finger domain 86 129 IPR001841 -
Dere12g0868 184 PANTHER OS11G0150450 PROTEIN 1 162 - -
Dere12g0868 184 MobiDBLite consensus disorder prediction 141 184 - -
Dere12g0868 184 CDD RING-H2_EL5-like 86 129 - -
Dere12g0868 184 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 64 139 IPR013083 -
Dere12g0868 184 FunFam Putative RING zinc finger domain superfamily protein 63 135 - -
Dere12g0868 184 SUPERFAMILY RING/U-box 77 135 - -
Dere12g0868 184 SMART ring_2 87 128 IPR001841 -
Dere12g0868 184 ProSiteProfiles Zinc finger RING-type profile. 87 129 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere12g0868 Dere-ChrDere12 16395484 16397258 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere12g0868 8 166 C3H Transcription Factor Family AT1G72220 32.184 1.67e-19 83.2