Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere12g0867 ATGGCAGGAGCTGAGACTACGAATTATGCTTCTGCAACTACATCTCCTGCTTCATCTAACAGCAAAAATCCGGCTACACAGTGTAACAATAAGCCCACAATGATCAAACGGTTCATTGGGGTTCGCCAGAGGCCGTCAGGTCGGTGGGTCGCCGAGATCAAGGACTCTTCTCAGCACGTCCGGCTATGGCTCGGAACCTATGACAAGCCGGAGGAAGCCGCCCGGGCCTACGACGAGGCGGCCCGGGCCCTCCGAGGCGAGAACGCCCGGACCAACTTCGTGAGCACCAACACCAGTCCTTCAAACGAAGGGCTGTCCAAGCAAAGTGGGCTGAGTTTTGCTTCTCTGAAAGCCAAGTTAAGCAAGAATCTTCAGAGCATAATGGCAAGGGCAAGCGATGGTGGAAGTAACAGTAATAAGGCATCGAAGAGTAGGGTAAGTGACCATTTCACCCTTGCAAGTATATTCCACAGGAGGACTAGTACTACTAATTATGGGCAGTACAAGTACAATAATCAAATCCCTAATAGTTTAATGGACAAAATGGTGCAGCCTAGTATAATAGTGCCGTCTGTAGTGGATCAACAAGGTGTAACTAGTTCCTGGGAGAGCTCTAGTGCGTCGGATTGTAGCTCGGAGTGGGCCAGGTTCCGGCAACCCGGGTTAGACTCCGACGGGTCGGAGGTGGGCGAGCAATTAGGGTTTAATTTGGAGCAATTGATGCGGTGGGTGGATAGTCCGGATCATAGTAATAGTGTCTATGGAAGTGATGATCATGAGGAAGGGTCAAGGAGTAAGAGGTTTAAGGTTTCTTCTTCAGTGCTTGTGCCTCCAACTTTCAGTGGATCTCCATATAACAATGATTGTGGGTCTCCATATAATGGATGTTGGTCACCATATAGTGCTTATGGATCTCCATATAATGGTGGCAAGTGA 936 0.4925 MAGAETTNYASATTSPASSNSKNPATQCNNKPTMIKRFIGVRQRPSGRWVAEIKDSSQHVRLWLGTYDKPEEAARAYDEAARALRGENARTNFVSTNTSPSNEGLSKQSGLSFASLKAKLSKNLQSIMARASDGGSNSNKASKSRVSDHFTLASIFHRRTSTTNYGQYKYNNQIPNSLMDKMVQPSIIVPSVVDQQGVTSSWESSSASDCSSEWARFRQPGLDSDGSEVGEQLGFNLEQLMRWVDSPDHSNSVYGSDDHEEGSRSKRFKVSSSVLVPPTFSGSPYNNDCGSPYNGCWSPYSAYGSPYNGGK 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere12g0867 311 Pfam AP2 domain 37 86 IPR001471 GO:0003700|GO:0006355
Dere12g0867 311 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 12 195 - -
Dere12g0867 311 MobiDBLite consensus disorder prediction 252 267 - -
Dere12g0867 311 MobiDBLite consensus disorder prediction 1 31 - -
Dere12g0867 311 PRINTS Ethylene responsive element binding protein signature 38 49 IPR001471 GO:0003700|GO:0006355
Dere12g0867 311 PRINTS Ethylene responsive element binding protein signature 60 76 IPR001471 GO:0003700|GO:0006355
Dere12g0867 311 ProSiteProfiles AP2/ERF domain profile. 37 94 IPR001471 GO:0003700|GO:0006355
Dere12g0867 311 SMART rav1_2 37 102 IPR001471 GO:0003700|GO:0006355
Dere12g0867 311 FunFam ethylene-responsive transcription factor RAP2-11 36 95 - -
Dere12g0867 311 CDD AP2 36 93 IPR001471 GO:0003700|GO:0006355
Dere12g0867 311 SUPERFAMILY DNA-binding domain 37 94 IPR016177 GO:0003677
Dere12g0867 311 MobiDBLite consensus disorder prediction 251 270 - -
Dere12g0867 311 Gene3D AP2/ERF domain 36 95 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere12g0867 Dere-ChrDere12 16365624 16366559 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere12g0867 37 106 AP2-EREBP Transcription Factor Family AT5G19790 65.714 1.67e-25 100
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Dere12g0867 AP2 4.9e-15 CL0081