Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere12g0866 ATGAGGCCCGTCTTTTGTGGAAACCTGGATTTTGATGCGCGACAGTCTGATGTTGAGAGACTCTTCAGAAGATATGGGAAAGTTGACAGAGTGGACTTGAAGTCCGGGTTTGCTTTTGTATACATGGAAGATGATCGTGATGCTGAATATGCAATCAGAAGACTTGATAGAACAGAATTTGGTAGAAAGGGGCGGCGAATTCGTGTAGAGTGGACTAAGCAAGAACGTGATAGCAGAAGGCCAGGTGATTCAAGAAGATCTTCAACTAATATGAGACCATCAAAGACATTGTTTGTCATAAATTTTGATCCTGTTCATACCAGGACAAGAGATTTAGAGAGGCACTTTGATTCCTATGGGAAAATATTGAATATAAGGATAAGAAGGAACTTTGCTTTTGTTCAGTATGAATCCCTGGAAGATGCTACTAGAGCATTGGAGGCAACTAACATGAGCAAGTTATTGGATCGGGTTATAACAGTGGAGTATGCAATAAGAGATGATGACGATAGAAGAAACGGATACAGTCCTGATAGAAGAGGCCGTGACATCTCCCCTGATGGGAGATATGGTCGTGGGAGATCTCTTAGTCCGTATCGTAGAGGTAGGGGTAGCCCAGACTATGGCCATGGATCAAATCCAACCTCCAGACCAGAACCAAGAGGAAGCCCCAAGTATGAACGAAATGAAAGCCCATTAAATGGAAGATATGACAGTCGATCACCTCCGCCCCGCTACAGGTCTCGTTCTCCAGGAGAAGTTGAATAG 768 0.4375 MRPVFCGNLDFDARQSDVERLFRRYGKVDRVDLKSGFAFVYMEDDRDAEYAIRRLDRTEFGRKGRRIRVEWTKQERDSRRPGDSRRSSTNMRPSKTLFVINFDPVHTRTRDLERHFDSYGKILNIRIRRNFAFVQYESLEDATRALEATNMSKLLDRVITVEYAIRDDDDRRNGYSPDRRGRDISPDGRYGRGRSLSPYRRGRGSPDYGHGSNPTSRPEPRGSPKYERNESPLNGRYDSRSPPPRYRSRSPGEVE 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere12g0866 255 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4 63 IPR000504 GO:0003723
Dere12g0866 255 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 97 159 IPR000504 GO:0003723
Dere12g0866 255 Gene3D - 79 216 IPR012677 -
Dere12g0866 255 FunFam Serine/arginine-rich splicing factor RS31 87 177 - -
Dere12g0866 255 Gene3D - 1 78 IPR012677 -
Dere12g0866 255 SUPERFAMILY RNA-binding domain, RBD 4 90 IPR035979 GO:0003676
Dere12g0866 255 FunFam Serine/arginine-rich splicing factor RS31 1 85 - -
Dere12g0866 255 MobiDBLite consensus disorder prediction 169 255 - -
Dere12g0866 255 SMART rrm1_1 96 162 IPR000504 GO:0003723
Dere12g0866 255 SMART rrm1_1 3 70 IPR000504 GO:0003723
Dere12g0866 255 SUPERFAMILY RNA-binding domain, RBD 88 194 IPR035979 GO:0003676
Dere12g0866 255 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 2 74 IPR000504 GO:0003723
Dere12g0866 255 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 95 166 IPR000504 GO:0003723
Dere12g0866 255 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 97 238 - -
Dere12g0866 255 MobiDBLite consensus disorder prediction 169 189 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere12g0866 Dere-ChrDere12 16343490 16347446 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere12g0866 4 161 Eukaryotic Initiation Factors Gene Family AT4G34110 26.012 2.77e-09 55.5