Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere12g0857 ATGAGTTTTGGGGATTTTCCAGATATTCCTCCTTACAGCAGCAGCAACGGTAGTACCTCCGTCAACAATTCTTCTAGAATGCCCTCTGGTGCAATCTCACAGCCTCGCCTTCTCACTTCAACTCTCACATCCAAAACCATGTTCAACTCTCCTGGCCTCTCTCTTGCCCTTGTGAGATCTTCTCAAACGGACATAGATGGGCAGAGCGATGTGAATAGAATGCCTGAAAGTTATGAGACAAATATTAATGGGAGAAGAAGCAGAGAAGAAGAGCAAGAAAGCAGATCTGGCAGCGATAACATGGAAGGTGCTTCCGGCGACGATCAAGACGCCTCCGACCACCCTTCCAAGAGGAAGCGCTATCACCGACACACCCCTCAACAAATACAAGAACTTGAAGCTTTGTTTAAGGAGTGTCCTCACCCGGATGAGAAGCAGAGATTGGAACTGAGCAAGAGGCTTTGTCTGGAAACTAGGCAAGTGAAATTCTGGTTCCAAAATAGAAGAACTCAGATGAAGACCCAATTGGAACGCCATGAGAACACACTGCTTAGGCAAGAGAATGACAAGCTCAGAGCGGAGAACATGTCCATTAGGGACGCCATGAGGAACCCCATTTGCTCAAACTGTGGGGGACCAGCTATAATCGGAGAAATTTCACTGGAGGAGCAACATCTCCGGATCGAAAACGCCCGGTTAAAGGACGAGCTAGACCGGGTTTGCGCTCTCGCCGGCAAGTTTCTGGGCCGCCCCATTTCTTCATTTGCCAACTCAATGGCTCCTCCATTGGCAAACTCAAGTTTGGAACTAGGAGTTGGGAGCAATGGCTTTGGTGGTATAAGCACTGTGCCTACAACACTGCCCTCGGGGCCTGATTTGGGCGTTGGGATTTCTAGCCCTTTATCCATGGTGAATCCTCCTCCGGCTAGATCGGTCGGCTCGGCGGTGTCCGGGTTGGATCGATCAATAGAGAGGTCTATGTTTCTGGAGCTTGCTTTGGCTGCCATGGATGAGTTGGTGAAGATGGCTCAGAGTGATGAGCCTCTTTGGATCAGGAGCTTGGAAGGTGGAAGAGAAATCATGAACCATGAGGAGTACTTGAGGACATTCACTCCATGCATTGGCCTGAAACCCAATGGTTTTGTGTCCGAGGCCTCAAGGGAGACTGGGATGGTCATCATTAACAGCTTGGCCCTTGTTGAAACTCTGATGGACTCGAATCGTTGGGCGGAGATGTTTCCTTGTATGATTGCGAGAGCCTCCACCACTGAAGTGATATCTAGTGGAATAAATGGAACCAGAAATGGCGCTCTTCAACTAATGCATGCAGAACTCCAAGTTCTTTCGCCGTTGGTTCCGGTTCGCGAGGTCAATTTTCTCCGGTTCTGCAAGCAGCACGCAGAGGGTGTGTGGGCTGTGGTGGATGTGTCCATCGATACCATCCGAGAAACTTCTGGCGCACCATCTTCGTTTGTGAACTGCAGGAGGCTTCCTTCTGGCTGTGTGGTGCAAGACATGCCTAATGGTTACTCCAAGGTGACATGGGTGGAACATGCAGAATACGATGAAAGCCAAGTTCACCAACTATATAGACCCTTGTTGAGCTCAGGCATGGGTTTTGGCGCGCAACGCTGGATCGCCACTCTCCAACGTCAATGCGAATGCCTCGCCATTTTGATGTCCTCATCAGTTCCCTCACGTGACCATTCTGCGATAACCGCGGGCGGGCGGCGCAGCATGCTGAAGCTAGCACAGCGCATGACCAACAACTTCTGCGCCGGCGTTTGTGCCTCCACGGTACACAAGTGGAACAAGCTCAACGCTGGCAACGTTGGCGAGGACGTCCGCGTCATGACCCGCAAGAGCGTCGACGATCCCGGGGAGCCGCCGGGGATCGTGCTGAGTGCCGCCACATCGGTGTGGCTCCCGGTGTCGCCGCAGCGACTGTTTGATTTCCTCCGTGACGAAAGGCTCCGAAGCGAGTGGGACATACTGTCGAACGGTGGACCCATGCAAGAGATGGCCCACATCGCTAAGGGCCAAGACCATGGCAACTGCGTCTCACTCCTACGAGCCAGTGCTATGAATTCGAACCAGAGTAGCATGCTGATTTTGCAAGAGACTTGCATAGACGCGGCAGGGTCGCTTGTGGTGTACGCGCCAGTGGATATACCGGCCATGCATTTGGTGATGAACGGAGGCGATTCGGCTTACGTGGCGTTACTGCCGTCGGGGTTTATGATTGTGCCAGACGGGCCTGGGTCGCGTGGCTCCCAAACGCCGGTCAGCAACGGCGGCGGTAGAGTAAGTGGGTCGCTTCTAACGGTGGCGTTTCAGATACTCGTGAATAGCCTCCCGACGGCTAAGCTGACGGTGGAGTCGGTTGAGACGGTGAACAACCTCATCTCGTGCACGGTTCAAAAGATAAAGGCCGCGCTTCGCTGTGAAAGCTGA 2454 0.5281 MSFGDFPDIPPYSSSNGSTSVNNSSRMPSGAISQPRLLTSTLTSKTMFNSPGLSLALVRSSQTDIDGQSDVNRMPESYETNINGRRSREEEQESRSGSDNMEGASGDDQDASDHPSKRKRYHRHTPQQIQELEALFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLERHENTLLRQENDKLRAENMSIRDAMRNPICSNCGGPAIIGEISLEEQHLRIENARLKDELDRVCALAGKFLGRPISSFANSMAPPLANSSLELGVGSNGFGGISTVPTTLPSGPDLGVGISSPLSMVNPPPARSVGSAVSGLDRSIERSMFLELALAAMDELVKMAQSDEPLWIRSLEGGREIMNHEEYLRTFTPCIGLKPNGFVSEASRETGMVIINSLALVETLMDSNRWAEMFPCMIARASTTEVISSGINGTRNGALQLMHAELQVLSPLVPVREVNFLRFCKQHAEGVWAVVDVSIDTIRETSGAPSSFVNCRRLPSGCVVQDMPNGYSKVTWVEHAEYDESQVHQLYRPLLSSGMGFGAQRWIATLQRQCECLAILMSSSVPSRDHSAITAGGRRSMLKLAQRMTNNFCAGVCASTVHKWNKLNAGNVGEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRLFDFLRDERLRSEWDILSNGGPMQEMAHIAKGQDHGNCVSLLRASAMNSNQSSMLILQETCIDAAGSLVVYAPVDIPAMHLVMNGGDSAYVALLPSGFMIVPDGPGSRGSQTPVSNGGGRVSGSLLTVAFQILVNSLPTAKLTVESVETVNNLISCTVQKIKAALRCES 817
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere12g0857 817 Coils Coil 169 201 - -
Dere12g0857 817 SMART HOX_1 116 179 IPR001356 GO:0003677
Dere12g0857 817 Pfam Homeodomain 118 173 IPR001356 GO:0003677
Dere12g0857 817 MobiDBLite consensus disorder prediction 64 124 - -
Dere12g0857 817 ProSiteProfiles 'Homeobox' domain profile. 115 175 IPR001356 GO:0003677
Dere12g0857 817 Pfam START domain 330 555 IPR002913 GO:0008289
Dere12g0857 817 SUPERFAMILY Homeodomain-like 101 175 IPR009057 -
Dere12g0857 817 SUPERFAMILY Bet v1-like 583 810 - -
Dere12g0857 817 ProSitePatterns 'Homeobox' domain signature. 150 173 IPR017970 GO:0000981|GO:0006355
Dere12g0857 817 SUPERFAMILY Bet v1-like 323 555 - -
Dere12g0857 817 FunFam Homeobox-leucine zipper protein GLABRA 2 330 554 - -
Dere12g0857 817 ProSiteProfiles START domain profile. 321 558 IPR002913 GO:0008289
Dere12g0857 817 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 116 813 IPR042160 -
Dere12g0857 817 MobiDBLite consensus disorder prediction 1 38 - -
Dere12g0857 817 Gene3D - 386 552 IPR023393 -
Dere12g0857 817 MobiDBLite consensus disorder prediction 64 81 - -
Dere12g0857 817 Gene3D - 104 191 - -
Dere12g0857 817 CDD START_ArGLABRA2_like 325 554 - -
Dere12g0857 817 CDD homeodomain 117 175 IPR001356 GO:0003677
Dere12g0857 817 MobiDBLite consensus disorder prediction 82 97 - -
Dere12g0857 817 MobiDBLite consensus disorder prediction 9 38 - -
Dere12g0857 817 SMART START_1 330 555 IPR002913 GO:0008289
Dere12g0857 817 FunFam Homeobox-leucine zipper protein HDG1 105 191 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere12g0857 Dere-ChrDere12 16215939 16221349 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere12g0857 48 817 Homeobox Transcription Factor Family AT3G61150 68.015 0.0 1034
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Dere12g0857 START 1.7e-58 CL0209