Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere12g0855 ATGTACAGTACAAGCTCGTTACCTTCGTCTCTACCCGACGCCGCCGTCGACCCCTCACCGCTCCTCCGTCACTCCTTCTCCGACCAAGTCCTCCGGCGGACGTCGCCGCAGTTACGGAGCGCGGCGCGATTCTTCCGGCTCGTGAGTGGGCGGCGGATGATGCTCCGGGAGCCGTCGGCGCGGGTGCGGGAGAACGCGGCGGAGCAGCTGGAGGCGCGTCAGAGTCACTGGGCACTCTCCAAGCCGGTGGTGATATTGGATGTCGTTTGGAACTTGGCGTTTGTGGCGATTGGGGTTGTCGTTTTGGGGCTGAGCGCGGAAGAGAAGCCTTCGGTGCCGTTGAGGGCGTGGATCTGTGGGTATTTGTTGCAGGGTGTGTTTCACAGTGTGTGTGTGATTGTTAAGTACCGACGACGCATGCAAGCCCAATCAGCTTCTGCGTCGGAAGAACACAATCAGAATGTGACTTCTTGGGAAAGTGGCGGCGATTTGAACTCCAATTTAGGGAGTGAGGTTGGCGGAGAGGATGCTTCTGAACGACAGGTTCAGGAAGGCAACGCATGCAGGAAGCGCATGGAATCTGCATATACTACGTTATCATTCTTTTGGTGGGTTCTTGGATTTTACTGGGTTACTACTGGTGGCCAGAGCTTGACCCAGGATTCGCCTCAGCTTTACTGGCTTTGTATCACCTTCCTTGCAATCGACATTGTAATTGTTTTAATCTGTGTTGTTGTCGCCTGTCTTGTTGGTATTGCTGTTTGCTGCTGTCTGCCATGCATACTTGCTATTTTGTCAGTGGTGGCGGATAAGGAAGGGGCAACCAAGGAAGAAATCAATAAATTGCCAAAATACAAGTTCCGGAGGGTAGATGAACAGAAGAATGTTGATGTTGATAATGCCCAAGATTCATCTTCCAAAGGGATAATGACAGAATGTGACAGCGACACGCCAGCAGAACATGTTCTTTCTGCGGAACATGCAGAGTGCTGTATCTGCCTGTCTCCCTATGAGGATGGAGCTGAACTTAGAGAACTTCCTTGTAACCACCATTTCCACATTGAATGCATCGACAAGTGGTTGCACATGAATGCTAACTGTCCTCTCTGCAAGTTCAACATTCTTACTAGAAACTACCATGAAGAAGTTTGA 1152 0.5113 MYSTSSLPSSLPDAAVDPSPLLRHSFSDQVLRRTSPQLRSAARFFRLVSGRRMMLREPSARVRENAAEQLEARQSHWALSKPVVILDVVWNLAFVAIGVVVLGLSAEEKPSVPLRAWICGYLLQGVFHSVCVIVKYRRRMQAQSASASEEHNQNVTSWESGGDLNSNLGSEVGGEDASERQVQEGNACRKRMESAYTTLSFFWWVLGFYWVTTGGQSLTQDSPQLYWLCITFLAIDIVIVLICVVVACLVGIAVCCCLPCILAILSVVADKEGATKEEINKLPKYKFRRVDEQKNVDVDNAQDSSSKGIMTECDSDTPAEHVLSAEHAECCICLSPYEDGAELRELPCNHHFHIECIDKWLHMNANCPLCKFNILTRNYHEEV 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere12g0855 383 SUPERFAMILY RING/U-box 279 376 - -
Dere12g0855 383 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 304 379 IPR013083 -
Dere12g0855 383 ProSiteProfiles Zinc finger RING-type profile. 330 371 IPR001841 -
Dere12g0855 383 Pfam Ring finger domain 329 371 IPR001841 -
Dere12g0855 383 SMART ring_2 330 370 IPR001841 -
Dere12g0855 383 PANTHER TARGET OF ERK KINASE MPK-1 52 376 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere12g0855 Dere-ChrDere12 16159576 16162933 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere12g0855 12 381 C3H Transcription Factor Family AT1G68070 43.817 4.13e-102 304