Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Dere12g0850 | ATGGAGACGATTAGGAAACGTATTCTTGAGGTGACGGTGATATCTGGCGAGAATCTCTGCATGGTTAGGAATCCGGTGACGGAGAATGCGTACGTGGAGGTTCGGACGGAGTCCATAAATTGTTGGACCACAAAAATGGCGAAGAAAGAAGGGGCAGGCTTAAGTTCAGGCTTAGGCTTAGGCTTAGGGTACCCTATATGGAACGAGAAGCTCTTCGTTGAGGCGCCCTTGCATGCAAAGTCTATTACGTTCGAGGTTCAGTGCAAGACGTGCAAAGGTAGGGTTCGATCTGTGGGGGTGGCACGAATCGCGATTTCTGATGTCCTTCCTAAGGAAGAGGGATGTTTGGAGGTGTTGCGTTACAGGCTGAGGAATTGGGAAGGAAGGAGAAGTGGGGTCATCAATTTCTTAGTGAGGCTGAAGAAAGAAGAAGATGATGAAGAGAAAGAGTCGAAGAGGTTGGAGAAGATGGGAATGATTGAGGGGAATTCGGGTGGTTTCAAGCCCGAGAGAATGGGAGGTCAGATCTCACCCCTAACCAGATCATTCCTGTTTGGTGGTGGAACCACCCTCTGCTCTCAATCCCTAACCAGATCTCACCCCTTCTCATTTCTCTCTGATTCGACTGTGGCGACAGCTGCATTGCCACACAAAGAATTTCTCTACATGGCTAAGCTTGTCGAGCAAGTCGAGGGCTACAAAGAGATGGTCGAGTTTATGGAGAAGGTCTCCGCCATCATGAAGAACGTCATGGCTTAA | 759 | 0.4901 | METIRKRILEVTVISGENLCMVRNPVTENAYVEVRTESINCWTTKMAKKEGAGLSSGLGLGLGYPIWNEKLFVEAPLHAKSITFEVQCKTCKGRVRSVGVARIAISDVLPKEEGCLEVLRYRLRNWEGRRSGVINFLVRLKKEEDDEEKESKRLEKMGMIEGNSGGFKPERMGGQISPLTRSFLFGGGTTLCSQSLTRSHPFSFLSDSTVATAALPHKEFLYMAKLVEQVEGYKEMVEFMEKVSAIMKNVMA | 252 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Dere12g0850 | 252 | SUPERFAMILY | C2 domain (Calcium/lipid-binding domain, CaLB) | 6 | 142 | IPR035892 | - | |
| Dere12g0850 | 252 | SMART | C2_3c | 8 | 117 | IPR000008 | - | |
| Dere12g0850 | 252 | Coils | Coil | 137 | 157 | - | - | |
| Dere12g0850 | 252 | Pfam | C2 domain | 8 | 112 | IPR000008 | - | |
| Dere12g0850 | 252 | ProSiteProfiles | C2 domain profile. | 1 | 118 | IPR000008 | - | |
| Dere12g0850 | 252 | SUPERFAMILY | 14-3-3 protein | 218 | 246 | IPR036815 | - | |
| Dere12g0850 | 252 | Gene3D | C2 domain | 3 | 163 | IPR035892 | - | |
| Dere12g0850 | 252 | PANTHER | INGRESSION PROTEIN FIC1 | 7 | 148 | - | - | |
| Dere12g0850 | 252 | Coils | Coil | 223 | 243 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Dere12g0850 | Dere-ChrDere12 | 16105303 | 16106192 | Dispersed/Tandem |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Dere12g0850 | 218 | 245 | 14-3-3 family | AT1G78300 | 78.571 | 3.06e-07 | 48.5 |