Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere12g0807 ATGTCTATGCTTCTGTGCCTCCTCCTGAAACTTCAAGTCTTCCTCATTTACGCTTCTCCATCTTTCTCTACCATCTCAGAGCTTGACACTCTCATGAGCATCAAACACTCTCTGGACCCAGAAAACCTCTTGTTGACCTCATGGACTCCACACTCTGATCCATGCCTCGACTTCGAAGGAGTGGCGTGTAACGAGCAAGGTCATGTGACCAATATTTCGCTGCAAGGAAAGGGTCTCTCTGGGAGACTAACTGCTGCTGTGGGTGGGCTTATCAGTCTCACGGGTCTGTATTTGCATTTCAATGCTCTGAATGGAAACATACCCAAGGAGATTGCCAATCTGACTGAGCTCAGTGATTTGTATCTCAATGAGAATAACCTCTCTGGGAATGTCCCTCGTGAGATTGGGACTATGTCTAATCTTCAAGTTTTGCAGCTTGGTTACAACAAGCTAAGTGGGAGTATACCATCTGAATTGGGAAACTTGAAGAGGCTCAGTGTTCTTGCTCTGCAATATAATCAACTGAATGGTGCAATACCTGCAAGTTTGGGTGAATTGGAGAAATTAACACGATTAGATCTGAGCTTTAATAGCCTCTTTGGCCCTATTCCAGTGAGATTAGCTAATGCACCTAAACTTGAGATTCTTGACATTCGAAACAATTCTCTTTCAGGCTATGTCCCCACAGCTTTAAGAAGACTGAAAGGGAAATTCCAATATATCAACAACCCTGGTTTATGTGGGGCTGAATTTGCCGACTTAAGCTCGTGTAAAGCTGTAAGCAGTTTGGACCCTAATAGACCTGAACCTTTTGAACCTAACAATCTTTCTACGAAAGATCTTCCAGCATCAGTTGATCCGAATCCTAGAAACTGCACTGTGACTCAGTGTAATATAAAGCCATTGAAATCTTCAAAAATTGGTTTGGTTTTTGGCGTTATTGGAGTTATTGTTGCTTCCACAGTTGCTGGACTTTTTGTGCTCTTATGGTATCGCCGTCAGAAACAGAAAATTGGAAGTGCTGCTGAATCATCTGATATCCGGCTTAGTACTGACCAGATCAAGGAAGTTTGCAGGAAAAGTGCATCTCCCCTGATCAGTTTGGAGTATTCCAATGGATGGGATCCGTTAGCCAAAGGTCGAGCTGGTTATTCTCAGGAACTTCTTGAGAGTCTCATGTTCAATCTAGAAGAAGTGGACTGTGCAACTCAGTGTTTCTCCGATGCTAACTTGTTGGCTAAGAGTAACTTTTCGACCATCTACAAGGGCATCCTGAGAAACGGATCACTTGTGGCTATTAACTGCATTGCCAAGACAAGCTGTAAGTCTGATGATACAGAATTCTTGAAGGGGTTGAAGCTATTGACATCATTAAAACACGAAAATCTAGTTCAGTTGCGAGGCTTTTGCTGCTCAAAAGGGAGGGGGGAGTGCTTTCTTATTTATGATTTTGTCCCAAATGGGAGTTTGTTGCAGTATCTTGATGTTAAGAATGGCCATGGTAAGATTCTAGAATGGTCCACTAGAGTATCCATCATCCATGGAATTGCCAAAGGCATTGGTTATTTGCATGGGAAGAAAGGAAGCAAGCATGCTCTTGTTCACCAAAACATATCAGCTGAGAAGGTGCTTCTTGGTGCCCAGTATAATGCTATGCTTTCAGATTCAGGATTGCACAAGCTCCTCGCGCATGATGTTGTCTTCTCGAGCCTCAAAGCCAGTGCTGCCATGGGATACCTTGCTCCAGAATACACAACCACTGGCCGCCTCACTGAAAAAAGCGATGTCTATGCATTTGGAGTAATGGTTTTCCAGCTTCTTACTGGAAAAAGTGATGTCACTCAGTTAAGTCGCCATGGGGCCATGGCAGAAACATCAACCTTCAGAGATTCGATCGATTTGAACCTTGAAGGGAAGTTCTCAGAATCAGAGGCAACAAAACTGAGAAAAATTGCTCTTCTTTGCACCCATGAATCCCCCGATTGCCGACCATCCATGGGCTACGTGATACAAGAACTAGGTCAAAGTATCTCTTGA 2037 0.4359 MSMLLCLLLKLQVFLIYASPSFSTISELDTLMSIKHSLDPENLLLTSWTPHSDPCLDFEGVACNEQGHVTNISLQGKGLSGRLTAAVGGLISLTGLYLHFNALNGNIPKEIANLTELSDLYLNENNLSGNVPREIGTMSNLQVLQLGYNKLSGSIPSELGNLKRLSVLALQYNQLNGAIPASLGELEKLTRLDLSFNSLFGPIPVRLANAPKLEILDIRNNSLSGYVPTALRRLKGKFQYINNPGLCGAEFADLSSCKAVSSLDPNRPEPFEPNNLSTKDLPASVDPNPRNCTVTQCNIKPLKSSKIGLVFGVIGVIVASTVAGLFVLLWYRRQKQKIGSAAESSDIRLSTDQIKEVCRKSASPLISLEYSNGWDPLAKGRAGYSQELLESLMFNLEEVDCATQCFSDANLLAKSNFSTIYKGILRNGSLVAINCIAKTSCKSDDTEFLKGLKLLTSLKHENLVQLRGFCCSKGRGECFLIYDFVPNGSLLQYLDVKNGHGKILEWSTRVSIIHGIAKGIGYLHGKKGSKHALVHQNISAEKVLLGAQYNAMLSDSGLHKLLAHDVVFSSLKASAAMGYLAPEYTTTGRLTEKSDVYAFGVMVFQLLTGKSDVTQLSRHGAMAETSTFRDSIDLNLEGKFSESEATKLRKIALLCTHESPDCRPSMGYVIQELGQSIS 678
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere12g0807 678 FunFam Protein NSP-INTERACTING KINASE 2 378 484 - -
Dere12g0807 678 Pfam Leucine rich repeat 139 199 IPR001611 GO:0005515
Dere12g0807 678 SUPERFAMILY Protein kinase-like (PK-like) 389 673 IPR011009 -
Dere12g0807 678 FunFam Leucine-rich repeat receptor-like kinase 26 134 - -
Dere12g0807 678 Gene3D Ribonuclease Inhibitor 138 259 IPR032675 -
Dere12g0807 678 MobiDBLite consensus disorder prediction 265 284 - -
Dere12g0807 678 Gene3D Transferase(Phosphotransferase) domain 1 485 678 - -
Dere12g0807 678 Pfam Protein tyrosine and serine/threonine kinase 411 673 IPR001245 GO:0004672|GO:0006468
Dere12g0807 678 Gene3D Phosphorylase Kinase; domain 1 379 484 - -
Dere12g0807 678 SUPERFAMILY L domain-like 24 235 - -
Dere12g0807 678 FunFam Protein NSP-INTERACTING KINASE 2 136 258 - -
Dere12g0807 678 Pfam Leucine rich repeat N-terminal domain 26 64 IPR013210 -
Dere12g0807 678 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 70 674 - -
Dere12g0807 678 Gene3D Ribonuclease Inhibitor 26 137 IPR032675 -
Dere12g0807 678 ProSiteProfiles Protein kinase domain profile. 406 678 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere12g0807 Dere-ChrDere12 15314323 15318641 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere12g0807 7 519 Miscellaneous Gene Families AT4G22730 51.509 2.62e-174 506
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IV Dere12g0807 PK_Tyr_Ser-Thr 7.6e-37 CL0016