Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere12g0789 ATGGAAGCAAGAGAAGGAATCAGTTCAGGGGTGACGGTGATAGGAGCAGAAGCTCCATCAGCCTATCACGTGGCACCGAGGAGTGAAGCTCCGAGCCAGACTCATGTTTCTGAGGTAGCAGCACCACCTCCACCAGCAGCAAATGTTGGTGCCTCACCGGTGACTGTAGGATTGGACGGAACTGCAGTAAAGAAGAAACGAGGCAGGCCAAGGAAGTACGGGCCAGATGGGTCTGTGGCTATGGCATTGTCACCATTGCCAATCTCTTCTTCGGCTCCACTTTCTAATGACTTCTCAGCTGGGAAGCGGGGCAAATCTGGAGGAATGGAGTACAAGAAGCATAAGAAAGCTGGGTTGGAGCATTTAGGTGATCTGAATGCTTGCTCTATTGGTACAAACTTTATGCCTCATATCATCACTGTCAATACTGGCGAGGATATTACAATGAAGGTTATCTCTTTTTCTCAACAAGGACCCCGTGCTATATGCATCCTTTCTGCAAATGGTGTAATTTCAAATGTTACACTACGTCAGCCTGATTCTTCTGGGGGTACTTTGACCTATGAGGGCCGCTTTGAGATACTATCCTTGTCTGGGTCATTCATGCCTACTGACAGCCAAGGAACAAGAAGCAGGTCAGGCGGGATGAGCGTATCTTTGGCAAGCCCTGATGGTCGTGTTGTAGGGGGTGGAGTTGCCGGTCTTCTTATTGCTGCCAGTCCTGTGCAGGTGGTGGTGGGAAGTTTTCTACCAAGTAACCAGCAAGACCAGAAACCAAAGAAGCCTAAGTCTTATGATGCACCAGCGGCTACTGTTACTCCGGCCACCATTACAGTCTCTTCTGCACCACCCTTAACTATTGCTGAGAAAGAAGATGGCTTAGGTGGTGGACATGTGCTGCAAAATTCTGGAACTCTTAACTCCAACCTGTCTTCTCCCTCGACCTTTCGACGAGAAAACTGGGTGAACATGCACTCCATGCCAGACTCGAGACAGTCGGCTACCGACATTAACATATCTTTGCCAGATAGTTAA 1035 0.4889 MEAREGISSGVTVIGAEAPSAYHVAPRSEAPSQTHVSEVAAPPPPAANVGASPVTVGLDGTAVKKKRGRPRKYGPDGSVAMALSPLPISSSAPLSNDFSAGKRGKSGGMEYKKHKKAGLEHLGDLNACSIGTNFMPHIITVNTGEDITMKVISFSQQGPRAICILSANGVISNVTLRQPDSSGGTLTYEGRFEILSLSGSFMPTDSQGTRSRSGGMSVSLASPDGRVVGGGVAGLLIAASPVQVVVGSFLPSNQQDQKPKKPKSYDAPAATVTPATITVSSAPPLTIAEKEDGLGGGHVLQNSGTLNSNLSSPSTFRRENWVNMHSMPDSRQSATDINISLPDS 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere12g0789 344 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 33 318 IPR039605 GO:0003680
Dere12g0789 344 ProSiteProfiles PPC domain profile profile. 131 271 IPR005175 -
Dere12g0789 344 MobiDBLite consensus disorder prediction 325 344 - -
Dere12g0789 344 Pfam Plants and Prokaryotes Conserved (PCC) domain 136 249 IPR005175 -
Dere12g0789 344 CDD DUF296 136 249 IPR005175 -
Dere12g0789 344 FunFam AT-hook motif nuclear-localized protein 1-like 136 266 - -
Dere12g0789 344 SUPERFAMILY AF0104/ALDC/Ptd012-like 134 252 - -
Dere12g0789 344 MobiDBLite consensus disorder prediction 290 313 - -
Dere12g0789 344 MobiDBLite consensus disorder prediction 24 54 - -
Dere12g0789 344 Gene3D - 136 264 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere12g0789 Dere-ChrDere12 15046789 15053728 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere12g0789 6 282 AT-hook Motif Nuclear Localized (AHL) Family AT4G12080 59.477 2.89e-102 303
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere12g0789 12 15046789 15053728 Dere11g0895 11 16940564 16949909 CCT
Dere12g0789 12 15046789 15053728 Dere12g0789 12 15046789 15053728 ECH