Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere12g0780 ATGTCGGCCTCATCTTCATCCACCTCTTCCTTTTCTCCGGACAACCTCTCTTCCTCCGATCAGCTCTGCTACGTCCAGTGCAATTACTGTGACACTGTTCTCGCGGTGAGTGTTCCTTGCACCAGTTTGCTCAAGACCGTCACTGTGAGATGCGGCCATTGCACCAACCTTCTGTCTGTAAATATGCGTGGCCTTCTTCTTCCTTCTGCCAATCAGCTTCACCTCGGACACACCTTCTTCTCTCCTCAGAATCTCATGGAGGAGATTCGAAATGCACCATCTTCAAATATGCAGATGATGAACCATCAGCTTCCGTATCCAAATAATTTGGCTATGAGTACCATGCGAGGAGGACTTGAGGAAATCCCTAAACCTCCACCAGCCAACAGACCACCAGAGAAGAGACAGAGAGTTCCATCTGCTTACAACCGCTTCATCAAGGACGAAATCCAACGCATAAAAGCTGGGAATCCTGATATAAGCCACAGAGAGGCCTTTAGTGCAGCAGCAAAGAATTGGGCTCATTTCCCCCACATCCACTTCGGACTTATGCCTGATCATCAACCCGTGAAGAAAGCTAACGTGCGCCAGGAAGGAGAAGACGTGCTTACGAAAGATGGGTTTTTCCCTCCTGCAAATGTAGGTATATCTCCCTTTTAG 660 0.4848 MSASSSSTSSFSPDNLSSSDQLCYVQCNYCDTVLAVSVPCTSLLKTVTVRCGHCTNLLSVNMRGLLLPSANQLHLGHTFFSPQNLMEEIRNAPSSNMQMMNHQLPYPNNLAMSTMRGGLEEIPKPPPANRPPEKRQRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNWAHFPHIHFGLMPDHQPVKKANVRQEGEDVLTKDGFFPPANVGISPF 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere12g0780 219 Gene3D High mobility group box domain 124 179 IPR036910 -
Dere12g0780 219 CDD HMG-box_SF 137 173 - -
Dere12g0780 219 FunFam Axial regulator YABBY 128 200 - -
Dere12g0780 219 Pfam YABBY protein 18 183 IPR006780 GO:0007275
Dere12g0780 219 SUPERFAMILY HMG-box 128 177 IPR036910 -
Dere12g0780 219 PANTHER PROTEIN YABBY 6-RELATED 5 195 IPR006780 GO:0007275
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere12g0780 Dere-ChrDere12 14938181 14942767 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere12g0780 30 217 C2C2-YABBY Transcription Factor Family AT4G00180 63.462 6.89e-70 211
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Dere12g0780 YABBY 1.6e-72 CL0114