Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere12g0762 ATGGAGAAGCACGAGTGCAAGCTCTGTTTCAAGAGCTTCTCTAATGGCAGAGCTCTGGGAGGTCATATGAGGTCTCACATGAAGAAGCTTCCAGTACCTCCGAAACCAGAGGAATCTCCCCCTCCTACCTTTCTCAGTTTCGAAGCCGAGTCAGCTTCTCCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCGTCTTCTTCATCTGAAGACGAAGATGATAAGGGTTTGAGCTATAGGCTAAGAGAGAATCCAAAGAAAACCGTTCGCCTCGTAGATCCTGAGTTTTCGTTCGTTGCGGATACTAATGGGTCTGTGATTCTTCAAGACAGAGAGAGCGAGACCGAGTCATCGAAGAACCCAACTCGGCGACGATCCAAACGCCCTTGGAAACTCGGTGGTTTCGACGAACAGTATCATCATGATCACCATAAGAAAATTCCGCAACTAGAAACCATGAAAAAGCTCAAATCGAACGAGCCCAGTAAGACTGAGTCGTGGATTGTGGAGCCTGAACCGGTGAGTTCAATCTCCAATGCGACGACCGAAGAAGACGTCGCATTCTGCCTTATGATGCTTTCTAGAGACAAATGGAAGAGGCAGAAGGATCTGGAAGACCAGTACGACGTCGTCGAAGGGAACAAGGACGAAGACGGAGATGAAGAAGAAGACGAAGACAAAGAAGAAGATGAAGCCGAAAGATCTTCAGACGAAAGTGATGAATCCGAGGGGGCTTTCAAATCATCGAAATCCAGAATTCGAGGGAAATACACGTGCGAGACGTGCAAGAAGGTGTTTCGATCGTATCAAGCACTTGGTGGGCACAGAGCGAGTCACAAGAAGATCAAAGCGGCGATGGCGAACGAGCCTGAATCAGAGCTCAAGAATAACAATGGTGGAGCTTCTTCAATGGCGGCTCGTGATAAGAAAATCCACGAATGCCCTTTTTGTTTCAGAGTGTTCTCTTCGGGTCAAGCTCTTGGGGGACACAAGAGGACCCATCTTACTGGTTCATCGACACCAATTCGAGCTTCTGCCAAGTTCGCTGAAAATTTTATAGATCTTAACCTTCCTGCTCCGATGGAAGAAGACGATGTTAGCCAAATCGACAACTCTGGAGTTTCATGTGCAGAATTCGTCAACCCCATCGGACAATGA 1155 0.4727 MEKHECKLCFKSFSNGRALGGHMRSHMKKLPVPPKPEESPPPTFLSFEAESASPSSSSSSSSSSSSSSEDEDDKGLSYRLRENPKKTVRLVDPEFSFVADTNGSVILQDRESETESSKNPTRRRSKRPWKLGGFDEQYHHDHHKKIPQLETMKKLKSNEPSKTESWIVEPEPVSSISNATTEEDVAFCLMMLSRDKWKRQKDLEDQYDVVEGNKDEDGDEEEDEDKEEDEAERSSDESDESEGAFKSSKSRIRGKYTCETCKKVFRSYQALGGHRASHKKIKAAMANEPESELKNNNGGASSMAARDKKIHECPFCFRVFSSGQALGGHKRTHLTGSSTPIRASAKFAENFIDLNLPAPMEEDDVSQIDNSGVSCAEFVNPIGQ 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere12g0762 384 SUPERFAMILY beta-beta-alpha zinc fingers 256 333 IPR036236 -
Dere12g0762 384 ProSitePatterns Zinc finger C2H2 type domain signature. 258 278 IPR013087 -
Dere12g0762 384 PANTHER ZINC FINGER PROTEIN ZAT1-RELATED 1 379 IPR044303 GO:0006355
Dere12g0762 384 MobiDBLite consensus disorder prediction 15 180 - -
Dere12g0762 384 MobiDBLite consensus disorder prediction 209 237 - -
Dere12g0762 384 Pfam C2H2-type zinc finger 311 334 - -
Dere12g0762 384 Pfam C2H2-type zinc finger 4 29 - -
Dere12g0762 384 Pfam C2H2-type zinc finger 256 280 - -
Dere12g0762 384 MobiDBLite consensus disorder prediction 161 180 - -
Dere12g0762 384 ProSiteProfiles Zinc finger C2H2 type domain profile. 256 283 IPR013087 -
Dere12g0762 384 Gene3D Classic Zinc Finger 253 333 - -
Dere12g0762 384 MobiDBLite consensus disorder prediction 111 160 - -
Dere12g0762 384 MobiDBLite consensus disorder prediction 67 89 - -
Dere12g0762 384 ProSitePatterns Zinc finger C2H2 type domain signature. 313 333 IPR013087 -
Dere12g0762 384 ProSitePatterns Zinc finger C2H2 type domain signature. 6 26 IPR013087 -
Dere12g0762 384 ProSiteProfiles Zinc finger C2H2 type domain profile. 311 333 IPR013087 -
Dere12g0762 384 ProSiteProfiles Zinc finger C2H2 type domain profile. 4 31 IPR013087 -
Dere12g0762 384 SUPERFAMILY beta-beta-alpha zinc fingers 3 31 IPR036236 -
Dere12g0762 384 MobiDBLite consensus disorder prediction 200 249 - -
Dere12g0762 384 SMART c2h2final6 311 333 IPR013087 -
Dere12g0762 384 SMART c2h2final6 4 26 IPR013087 -
Dere12g0762 384 SMART c2h2final6 256 278 IPR013087 -
Dere12g0762 384 MobiDBLite consensus disorder prediction 46 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere12g0762 Dere-ChrDere12 14559155 14560309 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere12g0762 1 368 C2H2 Transcription Factor Family AT3G60580 39.788 8.29e-66 209
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Dere12g0762 zf-C2H2_6 6.5e-09 CL0361