Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere12g0757 ATGGCTCTCATCACTCCTCAAGTTCAACATGCATTCTTTTACTTTTTCCCCCTCTTACCTTTCTTCGCCATTTTTCTGGCTACCCCTTCCTCTTGCTTCACCCCTAGAAAGCTTCTCAATGCTTCTTACTCCCCATCTGGTTCCGATTGGTCCCCGGCTGAGGCCACCTGGTATGGAAGCCCCACCGGTGCCGGAAGTGACGGAGGTGCGTGTGGGTATGGGAGTGCTGTGGAGCAACCTCCATTCTCTGCAATGATATCAGCTGGAGGCCCTCCTTTGTATGAATCGGGCAAAGGCTGCGGTGCTTGCTATGAGGTAAAGTGCACTGAGAATTCAGCCTGCTCTGGTAATCCGGTGAGAGTGGTGATCACCGACGAGTGCCCCGGGTGTGGCTCTAACCAAAAAGTTCACTTTGATTTGAGCGGCACTGCCTTCGGTGCCATGGCTGCTTCAGGTCAGGCTCAAAAGCTACGCGATGCTGGGATACTGCAGATTCAACACAGAAGAGTGGAATGCAACTATCGTGGCACGTCTTTGGCGTTCCACGTGGACGCGGGGTCGAACTCGAATTATTTCGCGTGCTTGATCGAGTACGAGGACGGAGACGGAGACCTGGCGAAGGTGGAAATGAAGGAGGCACTGGACTCTACTACGTGGACGCCGATGCAGCAGTCGTGGGGCGCCGTGTGGAAGCTGGACGCGGGGTCGCCGCTGAAGGCTCCGTTCTCGCTGCGGCTGACCACAGTGGAGTCCAGCCAGACCCTGGTGGCTAATAATGTGATTCCGGCGGGGTGGTCCCCTGGTCAGACTTACCGATCGCTTGTGAATTTTCAGACCTAG 840 0.5548 MALITPQVQHAFFYFFPLLPFFAIFLATPSSCFTPRKLLNASYSPSGSDWSPAEATWYGSPTGAGSDGGACGYGSAVEQPPFSAMISAGGPPLYESGKGCGACYEVKCTENSACSGNPVRVVITDECPGCGSNQKVHFDLSGTAFGAMAASGQAQKLRDAGILQIQHRRVECNYRGTSLAFHVDAGSNSNYFACLIEYEDGDGDLAKVEMKEALDSTTWTPMQQSWGAVWKLDAGSPLKAPFSLRLTTVESSQTLVANNVIPAGWSPGQTYRSLVNFQT 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere12g0757 279 SUPERFAMILY Barwin-like endoglucanases 41 176 IPR036908 -
Dere12g0757 279 Gene3D - 174 278 IPR036749 -
Dere12g0757 279 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 68 177 IPR007112 -
Dere12g0757 279 Pfam Expansin C-terminal domain 180 262 IPR007117 -
Dere12g0757 279 PANTHER EXPANSIN-B3 34 277 - -
Dere12g0757 279 SMART dpbb_1 86 167 IPR007112 -
Dere12g0757 279 Gene3D - 38 173 IPR036908 -
Dere12g0757 279 CDD DPBB_EXPB_N 50 172 - -
Dere12g0757 279 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 190 273 IPR007117 -
Dere12g0757 279 PRINTS Major pollen allergen Lol pI signature 149 164 IPR005795 GO:0005576|GO:0019953
Dere12g0757 279 PRINTS Major pollen allergen Lol pI signature 108 118 IPR005795 GO:0005576|GO:0019953
Dere12g0757 279 PRINTS Major pollen allergen Lol pI signature 197 212 IPR005795 GO:0005576|GO:0019953
Dere12g0757 279 PRINTS Major pollen allergen Lol pI signature 228 245 IPR005795 GO:0005576|GO:0019953
Dere12g0757 279 PRINTS Major pollen allergen Lol pI signature 181 196 IPR005795 GO:0005576|GO:0019953
Dere12g0757 279 PRINTS Major pollen allergen Lol pI signature 88 99 IPR005795 GO:0005576|GO:0019953
Dere12g0757 279 SUPERFAMILY PHL pollen allergen 178 273 IPR036749 -
Dere12g0757 279 Pfam Lytic transglycolase 87 166 IPR009009 -
Dere12g0757 279 PRINTS Expansin/Lol pI family signature 90 108 IPR007118 GO:0005576
Dere12g0757 279 PRINTS Expansin/Lol pI family signature 219 233 IPR007118 GO:0005576
Dere12g0757 279 PRINTS Expansin/Lol pI family signature 259 273 IPR007118 GO:0005576
Dere12g0757 279 PRINTS Expansin/Lol pI family signature 160 176 IPR007118 GO:0005576
Dere12g0757 279 PRINTS Expansin/Lol pI family signature 49 64 IPR007118 GO:0005576
Dere12g0757 279 PRINTS Expansin/Lol pI family signature 67 85 IPR007118 GO:0005576
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere12g0757 Dere-ChrDere12 14432654 14434737 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere12g0757 32 277 Expansin Gene Family AT1G65680 64.634 1.29e-120 344