Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere12g0756 ATGGCTCTCATCACTCTTCAACTTCAACATGCATTCTCTTACTTTGTCTCTCTCTTAGCTTTCTTTTCCATTTTTCTGGCTGCCCCTTCCTCTTGCTTTGTCCCCAGAAAGCTTCTCAATGCTTCTTACTCCCCATCTGGTTCGGATTGGTCACCGGCTGAGGCCACCTGGTTGACTATAGCTAGAAAAAGCTTTAACATTTTCGCTTATTCTATGTCTCTTTATCTGTGTGAAGGAGGTGCGTGTGGGTATGGTAGTGCTGTGGAGCAACCTCCATTCTCTGCAATGATATCAGCTGGAGGCCCTCCTTTGTATGAATCAGGCAAAGGCTGTGGTGCTTGCTATGAGGTGAAGTGCACTGAGAATTCAGCCTGCTCCGGTAATCCGGTAAAAGTAGTAATCACTGACGAGTGCCCTGAGTGTGGCTCGAACCAGAAAGTTCACTTTGATTTGAGCGGCACTGCCTTCGGTGCCATGGCTGTTTCAGGTCAAGCTCAGAAGCTACGCGATGCTGGGATACTGCAGATTCAACACAGAAGAGTGGAATGCAACTATCGTGGCACGTCGTTGGCGTTCCACGTGGACGCGGGGTCGAACTCGAACTATTTCGCGTGCTTAATCGAGTACGAGGACGGAGACGGAGACCTGGCGAAGGTGGAAATGAAGGAAGCACCGGACTCTGCCACGTGGACGCCGATGCAGCAGTCGTGGGGCGCTGTGTGGAAGCTGGACGCGGGGTCTCCGTTGAAGGCGCCGTTCTCGCTGCGGCTGACGACGGTGGAGTCGGGCCAGACCCTTGTGGCTAACAACGTAATTCCGGCGGGGTGGACCCCTGGTCAGACTTACCGATCAGTTGTGAATTTTCAGACCTAG 873 0.5246 MALITLQLQHAFSYFVSLLAFFSIFLAAPSSCFVPRKLLNASYSPSGSDWSPAEATWLTIARKSFNIFAYSMSLYLCEGGACGYGSAVEQPPFSAMISAGGPPLYESGKGCGACYEVKCTENSACSGNPVKVVITDECPECGSNQKVHFDLSGTAFGAMAVSGQAQKLRDAGILQIQHRRVECNYRGTSLAFHVDAGSNSNYFACLIEYEDGDGDLAKVEMKEAPDSATWTPMQQSWGAVWKLDAGSPLKAPFSLRLTTVESGQTLVANNVIPAGWTPGQTYRSVVNFQT 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere12g0756 290 SUPERFAMILY PHL pollen allergen 189 284 IPR036749 -
Dere12g0756 290 SMART dpbb_1 97 178 IPR007112 -
Dere12g0756 290 PRINTS Expansin/Lol pI family signature 49 64 IPR007118 GO:0005576
Dere12g0756 290 PRINTS Expansin/Lol pI family signature 171 187 IPR007118 GO:0005576
Dere12g0756 290 PRINTS Expansin/Lol pI family signature 230 244 IPR007118 GO:0005576
Dere12g0756 290 PRINTS Expansin/Lol pI family signature 270 284 IPR007118 GO:0005576
Dere12g0756 290 PRINTS Major pollen allergen Lol pI signature 160 175 IPR005795 GO:0005576|GO:0019953
Dere12g0756 290 PRINTS Major pollen allergen Lol pI signature 192 207 IPR005795 GO:0005576|GO:0019953
Dere12g0756 290 PRINTS Major pollen allergen Lol pI signature 208 223 IPR005795 GO:0005576|GO:0019953
Dere12g0756 290 PRINTS Major pollen allergen Lol pI signature 119 129 IPR005795 GO:0005576|GO:0019953
Dere12g0756 290 PRINTS Major pollen allergen Lol pI signature 99 110 IPR005795 GO:0005576|GO:0019953
Dere12g0756 290 PRINTS Major pollen allergen Lol pI signature 239 256 IPR005795 GO:0005576|GO:0019953
Dere12g0756 290 SUPERFAMILY Barwin-like endoglucanases 41 187 IPR036908 -
Dere12g0756 290 Pfam Expansin C-terminal domain 191 273 IPR007117 -
Dere12g0756 290 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 201 284 IPR007117 -
Dere12g0756 290 Pfam Lytic transglycolase 98 177 IPR009009 -
Dere12g0756 290 Gene3D - 185 289 IPR036749 -
Dere12g0756 290 PANTHER EXPANSIN-B3 26 288 - -
Dere12g0756 290 Gene3D - 38 184 IPR036908 -
Dere12g0756 290 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 79 188 IPR007112 -
Dere12g0756 290 CDD DPBB_EXPB_N 50 183 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere12g0756 Dere-ChrDere12 14373043 14375163 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere12g0756 32 288 Expansin Gene Family AT1G65680 58.755 4.28e-109 315