Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere12g0755 ATGAGCCAGTGTGTTCCTAGCTGGGATGTGGATGAAAATCCCACACCCTTCAGACTCCCTCTTCGCTCGAATTCCAATTCCACTGCTCCTGATGTCCCCATGTTGGACTATGAAGTAGCAGAGCTGACATGGGAGAATGGACATCTATCCATGCAGGGCTTAGGTCTGCCACGAGTACCGGAGAAACCCATCTCCGCCGTCGGCGCCGCTGCCAGGTCTACCGTCCCTTCCAAGTACACATGGGACAAGCCTCGCGCAAGTGGTACCTTGGAGTCCATAGTCAACCAAGCCACTCGCCTGCCCCACCGTAGCAAATCCGTCTTCGACGGCGGCGCCGCCGGGGGAGATGACTTAGTGCCTTGGTTTGATCCCCAGAGAGCGACGGCTGCAGCAGCGGCTGCCGCGGCGGCGGTGACGTCGAACACAGTGACTATGGACGCGATGGTGCCGTGCTCCAACCGTACGGACGAGCAGAAGAGCACGCAGATGATGGACTCAGTGCCCGGTGGTGGCGTGCTTGGCACGTGCGTGACGGGTTGTTCGACACGTGTGGGGTCATGTAGTGGGCCCGCGGCGCAGGAGGAGGAGACCCTGCTGGCGGCGAAACGCGCGAGGGTGGCGCGTGTGCCGGTGGGTCATCACGATTGGAGTAGCAAGGATCAGAGCGTGAGTGGGAGTGCTACGTTCGGAAGAGACAGCCAGCACGTGACGTTCGACACGTGCGATAGGGATTTGGGCGTGGGATTCACTTCCACGTCGATGGGGTCGCCGGAAAACACCAGCTCCGCCAAGCAGTACACCAAGACCACCACTGCCGACGACCATGATTCCGTTTGCCACAGTAGACCACAGAGAGAGACAGGTGATGAGGAGGACAAAAAGAAAGGAATTGGAAAATCCTCAGTGTCCACTAAGAGGAGTAGGGCTGCAGCTATACACAATCAATCTGAAAGGAAAAGGAGAGATAAGATAAACCAGAGGATGAAGACGCTGCAAAAGCTGGTCCCAAATTCCAGCAAGACTGATAAAGCTTCAATGCTGGATGAGGTGATAGAGTATCTCAAGCAATTACAAGCACAAGTGCAAATGATGAGTAAAATGAACATATCATCCATGATGCTGCCAATGGCCATGCAGCAACAGCTTCAAATGTCTATGATGACTCCAATGGGCATAGGCATGGGTATGGGTTTGGGCATGGGAATGGGAATAGATATAAACACCATGGGTCGTGCCAACATTGCTGGTATCCCTCCGGTCCTTCATCCTTCTGCTTTTATGCCTATGGCCTCATGGGATGCTTCTGCGGCCGGCAATGATTGGCTGCAAGGAACTCCGGCGACGACCATGATGCCGGACCCATTGTCCACTTTTCTAGCATGCCAGTCACAGCCTATGTCCATGGACGCATACAGTAGGATGGCAGCCATTTATCAGCAGCTACATCAACCTCCTGCTTCTAGTTCCAAGAGCTAA 1476 0.5467 MSQCVPSWDVDENPTPFRLPLRSNSNSTAPDVPMLDYEVAELTWENGHLSMQGLGLPRVPEKPISAVGAAARSTVPSKYTWDKPRASGTLESIVNQATRLPHRSKSVFDGGAAGGDDLVPWFDPQRATAAAAAAAAAVTSNTVTMDAMVPCSNRTDEQKSTQMMDSVPGGGVLGTCVTGCSTRVGSCSGPAAQEEETLLAAKRARVARVPVGHHDWSSKDQSVSGSATFGRDSQHVTFDTCDRDLGVGFTSTSMGSPENTSSAKQYTKTTTADDHDSVCHSRPQRETGDEEDKKKGIGKSSVSTKRSRAAAIHNQSERKRRDKINQRMKTLQKLVPNSSKTDKASMLDEVIEYLKQLQAQVQMMSKMNISSMMLPMAMQQQLQMSMMTPMGIGMGMGLGMGMGIDINTMGRANIAGIPPVLHPSAFMPMASWDASAAGNDWLQGTPATTMMPDPLSTFLACQSQPMSMDAYSRMAAIYQQLHQPPASSSKS 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere12g0755 491 FunFam transcription factor UNE10 isoform X1 303 368 - -
Dere12g0755 491 Coils Coil 314 334 - -
Dere12g0755 491 Gene3D - 303 369 IPR036638 GO:0046983
Dere12g0755 491 MobiDBLite consensus disorder prediction 1 29 - -
Dere12g0755 491 CDD bHLH_AtPIF_like 308 368 IPR047265 -
Dere12g0755 491 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 308 357 IPR011598 GO:0046983
Dere12g0755 491 MobiDBLite consensus disorder prediction 249 268 - -
Dere12g0755 491 MobiDBLite consensus disorder prediction 217 231 - -
Dere12g0755 491 MobiDBLite consensus disorder prediction 211 231 - -
Dere12g0755 491 Pfam Helix-loop-helix DNA-binding domain 313 358 IPR011598 GO:0046983
Dere12g0755 491 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 306 370 IPR036638 GO:0046983
Dere12g0755 491 MobiDBLite consensus disorder prediction 249 323 - -
Dere12g0755 491 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 39 490 IPR031066 -
Dere12g0755 491 SMART finulus 314 363 IPR011598 GO:0046983
Dere12g0755 491 MobiDBLite consensus disorder prediction 269 299 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere12g0755 Dere-ChrDere12 14268684 14274062 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere12g0755 1 472 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G00050 52.588 4.17e-108 325
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Dere12g0755 HLH 7.7e-14 No_clan