Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere12g0748 ATGGACTTTGAAGGGAACATGTTCTGTTTGAGCAACACAAACAGAGAGCAAAACGGTAATAGTAGTGGTAGTACCAGTTTTGCTTGGGATTTGTGGGAACCCTCTTCTTCTACCAATTCTACCCTCATAAACACGTTCTACACCGCCACCGCCGACGCGGCGGAGACCTCTGCTGCCACCGCTGCCCCCTCTCGCCACGAAGCGAGCCTCGCGAACGCCCTCATGTTTCTTCCTCAGGCTAGTAGTAGTGGTGACGCTGATCGTGACCACGACGGCGTACACCACCGTCATCAGCGGCAGCAGCAGGCGCTGTACTCCGGCGATGGCTCCCACGTGCACCTGGACCCACATCTCATGTGCTTGAAGCTGGGGAAGAGGCATTATTTTGAGGACGCTAATGCTCCTCTTGGTGGTGGTGGTGGGGCCGTGGGCTTTGCTTTGGCGGGAAAGAGAGGGAGAGGGTACTATGGAGGCGGCGGTGGTGTGAAGACGACGTCGTTGACGACGGCAGCGACGGTGCCGAGGTGTCAGGTGGAGGGGTGCCACGTGGCGCTGGTGAACTCGAAGGAGTACCACCGAAGGCACAAAGTCTGTGAGATGCATTCCAAGGCACCCAAGGTTGTAGTGTTAGGGTTAGAGCAGAGATTCTGTCAGCAGTGTAGCAGGTTTCATGTGATATCGGAGTTTGATGATTCGAAGAGGAGTTGCAGGAGGAGACTGGCTGGCCACAATGAACGAAGAAGAAAGAGCTTCCACGATTCTGTCGCAAGGAATTCCTCTCAAGAAAATAAGTTGATGTTTGGAGGGTTTCCATACTTATCTTCTTCACAACCACCATCATCAGGGTGTGCTCTCTCTCTTCTGTCATCCTCTAAGAGCGACCATTCTTGGCTTTCTCCTGCTGATCTCTCTACAAGATGCAGCGCTGCCCTACGAGAACTCATAGCCGAAAACCGAGCAGCAATCATGGCTAAGCAGATCAGTTTAGAAAGAGACTGGCACCCACACCACCACCACCAAGAGGAAGATGATGATGATCTTAACAAGGAGATCCAACTTCAGTCCAGTTTCAATTTCCCACAACACCACCAAATGTTTCCCTAG 1104 0.5263 MDFEGNMFCLSNTNREQNGNSSGSTSFAWDLWEPSSSTNSTLINTFYTATADAAETSAATAAPSRHEASLANALMFLPQASSSGDADRDHDGVHHRHQRQQQALYSGDGSHVHLDPHLMCLKLGKRHYFEDANAPLGGGGGAVGFALAGKRGRGYYGGGGGVKTTSLTTAATVPRCQVEGCHVALVNSKEYHRRHKVCEMHSKAPKVVVLGLEQRFCQQCSRFHVISEFDDSKRSCRRRLAGHNERRRKSFHDSVARNSSQENKLMFGGFPYLSSSQPPSSGCALSLLSSSKSDHSWLSPADLSTRCSAALRELIAENRAAIMAKQISLERDWHPHHHHQEEDDDDLNKEIQLQSSFNFPQHHQMFP 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere12g0748 367 Gene3D - 168 237 IPR036893 GO:0003677|GO:0005634
Dere12g0748 367 MobiDBLite consensus disorder prediction 81 102 - -
Dere12g0748 367 ProSiteProfiles Zinc finger SBP-type profile. 173 250 IPR004333 GO:0003677
Dere12g0748 367 Pfam SBP domain 176 249 IPR004333 GO:0003677
Dere12g0748 367 FunFam Squamosa promoter-binding-like protein 14 167 237 - -
Dere12g0748 367 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 79 299 IPR044817 GO:0003677
Dere12g0748 367 MobiDBLite consensus disorder prediction 84 98 - -
Dere12g0748 367 SUPERFAMILY SBT domain 174 254 IPR036893 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere12g0748 Dere-ChrDere12 14002212 14005451 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere12g0748 119 249 SBP-box Gene Family AT1G27370 53.435 1.42e-38 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Dere12g0748 SBP 1.4e-31 No_clan