Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere12g0747 ATGACAAACATAGTAACAAGTACTTGTTCACTGAATTTCATAGGTTGGGACTATCGAGCGAGCTCGGAACGGCGTTGTCCCAGGGAGAGAGAGATGTTGGACTATGAATGGGCGAACCCGTCGACTATAATGCTTACTGGGAACGAAGAAGCAGCTGCTGCTGCCGCCGCCGCTGCTGCGGCGGACTCAGACCAGAGCCACCGGCAAATCTTCGACCACTACGCTTCCCACGGCTTCTTACCCGACCATTTTATTTCTCAACCGCCGCCGGGGCCTACGCCGGCGACCACCGCGGATTTCTCTCTTGTACACCACCATCAACACTTTAACCCGCAACCCCATCAACATATCCACCAACACCACTCTCTCTTCGACCCACGCGCCTTCCCGGGCGCGTCTTCGTCCCCTTTTCCTCCTCCCCAGCCACCACCACCACCACAGCCTCCCCATTCCATGTTCTCCCTTGACCCGCTTCCTCCAGTCAACGCCAGCAACTGCGGGCTCGGGGGGCTTCTAGTCGTGCCCAAGTCGGAGGACGTGGGACGGCCCATGGACTTCTCGGCGTCCCGAATTGGGCTCAACCTGGGCGGCCGCACATACTTCTCCTCTGAGGACGACTTCGTGAGCCGGCTCTACCGCCGGTCCAGGCCGACGGAACCGGGCTCGACAACTTCGCTGAACAACAACTCACCGAGGTGCCAGGCCGAGGGATGCAATGCCGATCTCTCCCACGCGAAGCACTACCACCGCCGCCACAAGGTGTGCGAGTTTCACTCCAAGGCGGCCACCGTCATCGCCGCCGGGTTGACTCAGCGATTCTGCCAGCAGTGCAGCAGGTTCCATCTTCTGTCGGAGTTTGATAACGGAAAACGTAGCTGCAGGAAAAGACTCGCAGATCATAATCGTCGCAGAAGAAAAACTCAGCAGCCAGCTCAAGAAACCCAGAAGTCTCAGCTCGAAAATGCTCGAAATTCTACTTTGGACCGGACGTCCCCGCCGGATTCCGGAGCTCAGTCATCCTCATCGGTGACGGTGGCGGTGTCGCCGCCGGATTATTTCCGGCAAAGGCCATATCAAAGTACAAGCTCTTCCACAACATCAAGCACACTGTTTTTCTCAAGTGGGTAG 1128 0.5762 MTNIVTSTCSLNFIGWDYRASSERRCPREREMLDYEWANPSTIMLTGNEEAAAAAAAAAAADSDQSHRQIFDHYASHGFLPDHFISQPPPGPTPATTADFSLVHHHQHFNPQPHQHIHQHHSLFDPRAFPGASSSPFPPPQPPPPPQPPHSMFSLDPLPPVNASNCGLGGLLVVPKSEDVGRPMDFSASRIGLNLGGRTYFSSEDDFVSRLYRRSRPTEPGSTTSLNNNSPRCQAEGCNADLSHAKHYHRRHKVCEFHSKAATVIAAGLTQRFCQQCSRFHLLSEFDNGKRSCRKRLADHNRRRRKTQQPAQETQKSQLENARNSTLDRTSPPDSGAQSSSSVTVAVSPPDYFRQRPYQSTSSSTTSSTLFFSSG 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere12g0747 375 MobiDBLite consensus disorder prediction 111 158 - -
Dere12g0747 375 ProSiteProfiles Zinc finger SBP-type profile. 230 307 IPR004333 GO:0003677
Dere12g0747 375 MobiDBLite consensus disorder prediction 311 375 - -
Dere12g0747 375 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 213 366 IPR044817 GO:0003677
Dere12g0747 375 Gene3D - 224 294 IPR036893 GO:0003677|GO:0005634
Dere12g0747 375 Pfam SBP domain 233 306 IPR004333 GO:0003677
Dere12g0747 375 MobiDBLite consensus disorder prediction 299 375 - -
Dere12g0747 375 MobiDBLite consensus disorder prediction 132 155 - -
Dere12g0747 375 FunFam Squamosa promoter-binding-like protein 14 224 294 - -
Dere12g0747 375 SUPERFAMILY SBT domain 231 310 IPR036893 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere12g0747 Dere-ChrDere12 13965592 13968269 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere12g0747 32 280 SBP-box Gene Family AT1G02065 46.275 1.28e-57 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Dere12g0747 SBP 1.2e-30 No_clan