Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere12g0743 ATGCTGCCTCGCTTGCTTATACCACTTTTAATCGTTCCCTTTCTGATAATTCCCTCCTGCGTTTCTGGTTACTCATCGAGTGACATCAAATCATGGTGCAGCCAAACCCCTAACCCTCAGCCATGTGAGTATGGCTTCTTGAGCAGTAAAGCTGTTAGCCACAGACCCGTCAAGTCCAAGTCTGATTTTCTCAAGGCTTCAATAGAACTAGCCCTACATAACTCCCAGAAAGGAGAAGAGACCACTCGTTCACTGGGTCCCAAGTGCAGGAACTCACGTGAAAAAGCTGCATGGGCTGATTGCCTTGAGCTCTATGAGTACACCATTGTCAGGCTCAACAAAACCCTAGACCCTTACTCCAAGCACACCCAGGCTGATACTGAAACATGGATCAGCACAGCCCTAACCAACCTTGAAACCTGCAAAACTGGGTTCCATGAGCTCAGGACTGGCGACTATATTTGGCCATTGATTTCTAACAATAATGTTACTAAACTGCTGAGTAATTGCTTGGCTCTTAATTACAAGGCTCCACCCAAGGAAGAAAATAATAGAGATGAGTTCCCTGCATGGGTCAAGCCCGGCGACCGGAAGTTGCTGCAGGCGTCGTCTTCTCCGGCTTCTCAGGCTAACGTCGTGGTGGCGAAAGACGGGTCCGGCAAGTTCACTTCGGTGAAGGACGCCGTAAGTGCTGCACCAAGTAGCAGTGGGAGGTATGTGATATACGTGAAGGCAGGAGTGTACAATGAACAATTTGATATAACGAAAAAGAACATTATGTTGGTCGGAGATGGTATAGGGAAGACTATCATTACTGGTAGTAAAAGTGTTGGAGGAGGCACCACAACCTTCCGTTCAGCCACTGTCGCTGTTGTTGGGGATGAATTTATTGCTAGAGACATCACATTTAGGAACACTGCTGGACCATCAAACCATCAAGCTGTGGCACTACGTTCAGGGTCAGATCTATCAGTATTTTACAAATGTGGCTTTGAGGGTTACCAAGATACACTATATGTCCATTCTGAGAGGCAATTCTATAGAGAATGTGACATTTATGGCACAGTTGATTTCATTTTTGGCAATGCTGCTGTGATTCTTCAAAATTGTAACATTGTTGCAAGAAACCCTCCCCAGAAAACCATCACAGTCACTGCTCAAGGTCGAACTGATCCGAACCAAAACACTGGAATAATCATTCACAATTCCAAGGTCACGGCGGCCTCGGATTTGAATCCGAGCTCCGTTAAGTCTTATCTGGGTAGGCCCTGGAAAAAATATTCAAGAACAGTTTTCATGAAAGCTTCTCTTGATAGTTTTATCAACCCAGCTGGTTGGATGCCATGGAGTGGCAATTTTGCCCTAGACACTTTGTACTATGCAGAGTATGCAAACACAGGTCCTGGTTCTTCCACTGCAAATAGGGTTAAATGGAAGGGATACCATGTTCTTACAAGTCCATCTCAAGCCTCACCCTTCGCTGTTGCCAACTTCATTGCTGGAAATTCATGGTTACCAGCCACTAATGTGCCCTTCACATCTGGTCTTTAA 1551 0.4565 MLPRLLIPLLIVPFLIIPSCVSGYSSSDIKSWCSQTPNPQPCEYGFLSSKAVSHRPVKSKSDFLKASIELALHNSQKGEETTRSLGPKCRNSREKAAWADCLELYEYTIVRLNKTLDPYSKHTQADTETWISTALTNLETCKTGFHELRTGDYIWPLISNNNVTKLLSNCLALNYKAPPKEENNRDEFPAWVKPGDRKLLQASSSPASQANVVVAKDGSGKFTSVKDAVSAAPSSSGRYVIYVKAGVYNEQFDITKKNIMLVGDGIGKTIITGSKSVGGGTTTFRSATVAVVGDEFIARDITFRNTAGPSNHQAVALRSGSDLSVFYKCGFEGYQDTLYVHSERQFYRECDIYGTVDFIFGNAAVILQNCNIVARNPPQKTITVTAQGRTDPNQNTGIIIHNSKVTAASDLNPSSVKSYLGRPWKKYSRTVFMKASLDSFINPAGWMPWSGNFALDTLYYAEYANTGPGSSTANRVKWKGYHVLTSPSQASPFAVANFIAGNSWLPATNVPFTSGL 516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere12g0743 516 Pfam Plant invertase/pectin methylesterase inhibitor 28 173 IPR006501 GO:0004857
Dere12g0743 516 NCBIfam pectinesterase inhibitor domain 9 176 IPR006501 GO:0004857
Dere12g0743 516 FunFam Pectinesterase 205 516 - -
Dere12g0743 516 SUPERFAMILY Pectin lyase-like 205 515 IPR011050 -
Dere12g0743 516 Gene3D Invertase/pectin methylesterase inhibitor family protein 23 176 IPR035513 -
Dere12g0743 516 Pfam Pectinesterase 211 502 IPR000070 GO:0030599|GO:0042545
Dere12g0743 516 ProSitePatterns Pectinesterase signature 1. 235 254 IPR018040 -
Dere12g0743 516 Gene3D - 206 516 IPR012334 -
Dere12g0743 516 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 27 174 IPR035513 -
Dere12g0743 516 CDD PMEI-like_3 31 178 - -
Dere12g0743 516 PANTHER PECTINESTERASE 15 508 - -
Dere12g0743 516 SMART PMEI_2 24 173 IPR006501 GO:0004857
Dere12g0743 516 ProSitePatterns Pectinesterase signature 2. 352 361 IPR033131 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere12g0743 Dere-ChrDere12 13867669 13871009 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere12g0743 1 516 Carbohydrate Esterase AT2G45220 63.724 0.0 671