Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere12g0733 ATGGAAAGTGATGCCCAGGATAACTTTGGCTCATCCTCTTCTTCCTCCTCCTCTTCTTCTTCTTCTTCATCTTCATCGTCTCTGAAAACATCTGCTTCTTCAAACTCAGAAAAAGCTTTAGAAAATGGTGATTCCTGCAAAAAGAGGCAGAGGAGTGACGAGAACGATGAAAGGAAGCATCCAACGTATAGGGGCGTGAGGATGAGGAACTGGGGAAAATGGGTTTCAGAGATCCGCGAGCCGAGAAAGAAGTCGAGAATATGGCTTGGAACGTACCCTACTGCAGAAATGGCGGCTCGAGCCCACGACGTAGCTGCTTTAGCCATTAAGGGGCACTCGGCTTACCTCAATTTCCCTGAGTTGGCTTCGGAGCTTCCCCGCCCCGCCAGCACGGCTCCTAAGGACATCCAAGCAGCGGCTGCAAAGGCTGCAGCCACTGTCATTGAGGTGGCTAACAAGCATTGTCAAGCTGAAGCTGAAGCTGAAGCAGAGCCGATCCAAGCCGAGCAGGCTTCATCTTCAACTCAAGAGTTTTCCAGTTCTCCATCTGCTAATGAGGATGAAGCTCTGTTTGACCTTCCAGATCTTTTCAATGATGGCAACAATGGACTCTGCTCCTATTCTTCTTCATCTTGTTCTTCTTCTTCATGGAATTTGTGTGCAGTTGACAGTGGCTTCCGGCTTGAGGAGCCATTTTTCTGGGAGAACTACTAG 714 0.4902 MESDAQDNFGSSSSSSSSSSSSSSSSSLKTSASSNSEKALENGDSCKKRQRSDENDERKHPTYRGVRMRNWGKWVSEIREPRKKSRIWLGTYPTAEMAARAHDVAALAIKGHSAYLNFPELASELPRPASTAPKDIQAAAAKAAATVIEVANKHCQAEAEAEAEPIQAEQASSSTQEFSSSPSANEDEALFDLPDLFNDGNNGLCSYSSSSCSSSSWNLCAVDSGFRLEEPFFWENY 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere12g0733 237 Gene3D AP2/ERF domain 62 120 IPR036955 GO:0003700|GO:0006355
Dere12g0733 237 MobiDBLite consensus disorder prediction 1 64 - -
Dere12g0733 237 MobiDBLite consensus disorder prediction 41 64 - -
Dere12g0733 237 Pfam AP2 domain 61 112 IPR001471 GO:0003700|GO:0006355
Dere12g0733 237 ProSiteProfiles AP2/ERF domain profile. 62 119 IPR001471 GO:0003700|GO:0006355
Dere12g0733 237 MobiDBLite consensus disorder prediction 158 185 - -
Dere12g0733 237 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 20 200 - -
Dere12g0733 237 SUPERFAMILY DNA-binding domain 62 120 IPR016177 GO:0003677
Dere12g0733 237 SMART rav1_2 62 125 IPR001471 GO:0003700|GO:0006355
Dere12g0733 237 MobiDBLite consensus disorder prediction 167 185 - -
Dere12g0733 237 PRINTS Ethylene responsive element binding protein signature 63 74 IPR001471 GO:0003700|GO:0006355
Dere12g0733 237 PRINTS Ethylene responsive element binding protein signature 85 101 IPR001471 GO:0003700|GO:0006355
Dere12g0733 237 FunFam Ethylene-responsive transcription factor 2 61 120 - -
Dere12g0733 237 CDD AP2 63 121 IPR001471 GO:0003700|GO:0006355
Dere12g0733 237 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere12g0733 Dere-ChrDere12 13670649 13671362 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere12g0733 48 233 AP2-EREBP Transcription Factor Family AT2G44940 56.250 2.50e-71 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Dere12g0733 AP2 2.6e-14 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere12g0733 12 13670649 13671362 Dere12g0733 12 13670649 13671362 ECH