Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere12g0727 ATGAGTCGTAGGGTGAGGAGGAAGGTTGCAAGGAAAGGAAAAGAAAAGGTGGTTTTCCCAAGTTACCCTGAAATTCAAGATGAGGTTTTGGATTCAGACCCTGAAAGGGTTGTTGATTGGAGGAGCTTACCTGATGACACAGTAATTCAGCTGTTTTCATGTCTGAGTTATCGTGACCGAGCAAGCTTATCTTCAACTTGTAGGACATGGAGGTTTCTTGGTAGCTCTCCATGTTTATGGACTTCTCTTGATCTTCGTTCTCACAGGTTTGATGCCACCATGGCATCTTCACTTGCTCCAAGGTGTGTGAATCTTCGGAAGCTTAGATTTCGTGGGGCAGAGTCTGCTGATGCGATAATTCATCTTCAAGCTAGGAACTTGCGCGAAATAAGTGGTGACTATTGCAGGAAGATTACTGATGCGACTCTTGCGGTAATTGTTGCTCGGCATGAGTTACTAGAGAGTCTTCAGCTTGGGCCAGATTTTTGTGAAAGAATCAGCAGTGATGCAATAAAAGCAGTAGCTCATTGCTGTCCTAGATTAAACAAACTTAGACTCTCAGGCATTAGGGATGTGAATTCTGATGCCATAAATGCTTTGGCTAAGCATTGTCTGAATTTGACCGATATTGGATTCATTGATTGTCTGAATGTTGATGAGCTAGCATTGGGAAATGTGTTGTCAGTTCGTTTTCTTTCAGTTGCGGGGACATCAAGTATGAAGTGGGGTGTGGTTTCTCATCTTTGGCATAAGCTGCCTAACCTTATTGGAATAGATGTTTCAAGAACTGATATTGGTCCATCTGCTGTATCAAGATTGTTATCATCACAGAGCTTGAAGGTTTTGTGTGCTCTGAATTGTCCTATCCTTGAAGAAGACACCAGCTTCTCGGCAAGTAAATATAAAAATAAGCTCTTAATTGCCCTTTCTACTGATATTTTTAAAGGACTAGCTTCTTTATTTTTTGATGATACAAAGAAAGGAAAAAATGTGTTTTTGGACTGGAGGAATGTGAAGAATAACAATAAGGACTTAAATGAAATTATGATCTGGCTTGAGTGGATCCTATCCCATACACTTCTGCGATCTGCTGAGAGCTCTCAACAAGGTCTGGATAATTTTTGGGTTGAACAAGGTGGGGCACTCTTGCTTAGTCTAATGCAAAGTCCCCAAGAGGATGTTCAGGAGAGGGCAGCCACGGGTCTTGCAACGTTTGTTGTAATTGATGATGAAAATGCTAGCATTGATTGTGGAAGGGCTGAAGCAGTTATGCGAGATGGTGGTATACGCCTTCTTCTTGGCTTGGCACAATCATGGAGGGAAGGGCTTCAGTCTGAGGCAGCTAAGGCCATAGCAAATCTGTCCGTCAATGCCAATGTAGCGAAAGCTGTAGCAGAGGAAGGTGGTATTGATATTCTTGCTGGTTTGGCTAGGTCCATGAACAAGCTGGTGGCCGAGGAGGCTGCTGGAGGATTGTGGAATCTCTCTGTTGGTGAAGAGCACAAGGGTGCAATTGCTGAGGCTGGTGGAATAAAAGCTTTGGTGGCTCTTATATTCAAGTGGTCCTCTAGTGGAGATGGAGTTTTGGAACGTGCTGCTGGTGCATTGGCTAATTTGGCGGCTGATGACAAATGTAGTACAGAAGTTGCACTGGCTGGTGGTGTACATGCTTTAGTGATGCTAGCACGCAACTGCAAATTTGAAGGAGTGCAAGAGCAGGCTGCTCGTGCATTGGCTAATTTGGCTGCTCATGGAGATAGCAACAGTAACAATGCTGCTGTTGGACAAGAAGCAGGTGCTCTTGAGGCACTTGTTCAACTTACGCGTTCTCCCCATGAGGGTGTCAGGCAAGAAGCTGCTGGTGCACTTTGGAATTTGTCATTTGATGATAGAAATCGAGAAGCCATCGCAGCAGCTGGAGGAGTTCAGGCTTTGGTTGCTCTTGCACAGTCATGTTCTAATGCTTCCCCTGGACTTCAAGAGAGGGCTGCTGGTGCTCTCTGGGGATTGTCAGTTTCTGAAGCCAATAGCATTGCTATTGGGCGAGAAGGAGGTGTTGCGCCTTTGATTGCACTGGCGCGGTCTGAAGCTGAGGATGTTCACGAAACCGCTGCAGGAGCACTCTGGAATCTTGCTTTTAACCCTGGCAATGCTTTACGTATTGTAGAGGAAGGAGGAGTTTCTGCACTTGTTGATCTCTGTTCATCATCATTATCTAAGATGGCACGTTTCATGGCTGCGTTGGCATTGGCTTACATGTTTGATGGGAGAATGGATGAATTTGCTTTGGTAGGCACCTCATCAGAAAGCATCTCTAAGAGTGTGAGCTTGGATGGTGCTAGAAGGATGGCTTTGAAACACATTGAAGCTTTCATCCTTATGTTTTCTGATCCGCAAGCATTTGCTGTTGCTTCTGCATCATCAGCTCCTGCAGCATTGGCTCAAGTTACTGAAGGCGCCCGAATTCAAGAAGCAGGACATCTTAGATGCAGTGGTTCTGAAATTGGGAGATTTGTCACTATGCTACGAAACCCATCATCTATATTAAAAGCTTGCGCTGCATTTGCTCTTCTCCAGTTTACGATTCCTGGTGGACGGCACGCAATGCACCACGCTAGCCTCATGCAGAATGCAAGTGCTGCAAGAGTTCTTCGTGGGGCGGCTGCCTCTGCGACTGCCCCTGTTGAAGCAAAAATATTTGCCAGGATTGTTCTTCGCAACCTTGAGTTTCACCGGACTGATTCGCAAACTGTCTAG 2757 0.4534 MSRRVRRKVARKGKEKVVFPSYPEIQDEVLDSDPERVVDWRSLPDDTVIQLFSCLSYRDRASLSSTCRTWRFLGSSPCLWTSLDLRSHRFDATMASSLAPRCVNLRKLRFRGAESADAIIHLQARNLREISGDYCRKITDATLAVIVARHELLESLQLGPDFCERISSDAIKAVAHCCPRLNKLRLSGIRDVNSDAINALAKHCLNLTDIGFIDCLNVDELALGNVLSVRFLSVAGTSSMKWGVVSHLWHKLPNLIGIDVSRTDIGPSAVSRLLSSQSLKVLCALNCPILEEDTSFSASKYKNKLLIALSTDIFKGLASLFFDDTKKGKNVFLDWRNVKNNNKDLNEIMIWLEWILSHTLLRSAESSQQGLDNFWVEQGGALLLSLMQSPQEDVQERAATGLATFVVIDDENASIDCGRAEAVMRDGGIRLLLGLAQSWREGLQSEAAKAIANLSVNANVAKAVAEEGGIDILAGLARSMNKLVAEEAAGGLWNLSVGEEHKGAIAEAGGIKALVALIFKWSSSGDGVLERAAGALANLAADDKCSTEVALAGGVHALVMLARNCKFEGVQEQAARALANLAAHGDSNSNNAAVGQEAGALEALVQLTRSPHEGVRQEAAGALWNLSFDDRNREAIAAAGGVQALVALAQSCSNASPGLQERAAGALWGLSVSEANSIAIGREGGVAPLIALARSEAEDVHETAAGALWNLAFNPGNALRIVEEGGVSALVDLCSSSLSKMARFMAALALAYMFDGRMDEFALVGTSSESISKSVSLDGARRMALKHIEAFILMFSDPQAFAVASASSAPAALAQVTEGARIQEAGHLRCSGSEIGRFVTMLRNPSSILKACAAFALLQFTIPGGRHAMHHASLMQNASAARVLRGAAASATAPVEAKIFARIVLRNLEFHRTDSQTV 918
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere12g0727 918 SUPERFAMILY ARM repeat 381 743 IPR016024 -
Dere12g0727 918 SMART arm_5 498 541 IPR000225 GO:0005515
Dere12g0727 918 SMART arm_5 416 456 IPR000225 GO:0005515
Dere12g0727 918 SMART arm_5 588 628 IPR000225 GO:0005515
Dere12g0727 918 SMART arm_5 629 672 IPR000225 GO:0005515
Dere12g0727 918 SMART arm_5 457 497 IPR000225 GO:0005515
Dere12g0727 918 SMART arm_5 714 755 IPR000225 GO:0005515
Dere12g0727 918 SMART arm_5 542 583 IPR000225 GO:0005515
Dere12g0727 918 SMART arm_5 673 713 IPR000225 GO:0005515
Dere12g0727 918 PANTHER PROTEIN ARABIDILLO 1 1 914 - -
Dere12g0727 918 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 553 584 IPR000225 GO:0005515
Dere12g0727 918 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 468 510 IPR000225 GO:0005515
Dere12g0727 918 Pfam Armadillo/beta-catenin-like repeat 675 712 IPR000225 GO:0005515
Dere12g0727 918 Pfam Armadillo/beta-catenin-like repeat 499 541 IPR000225 GO:0005515
Dere12g0727 918 Pfam Armadillo/beta-catenin-like repeat 552 583 IPR000225 GO:0005515
Dere12g0727 918 Pfam Armadillo/beta-catenin-like repeat 629 671 IPR000225 GO:0005515
Dere12g0727 918 Pfam Armadillo/beta-catenin-like repeat 462 496 IPR000225 GO:0005515
Dere12g0727 918 Pfam Armadillo/beta-catenin-like repeat 591 627 IPR000225 GO:0005515
Dere12g0727 918 Pfam Armadillo/beta-catenin-like repeat 421 455 IPR000225 GO:0005515
Dere12g0727 918 Gene3D - 480 762 IPR011989 -
Dere12g0727 918 Gene3D - 356 479 IPR011989 -
Dere12g0727 918 Gene3D Ribonuclease Inhibitor 33 310 IPR032675 -
Dere12g0727 918 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 599 641 IPR000225 GO:0005515
Dere12g0727 918 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 684 726 IPR000225 GO:0005515
Dere12g0727 918 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 640 685 IPR000225 GO:0005515
Dere12g0727 918 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 509 554 IPR000225 GO:0005515
Dere12g0727 918 Pfam F-box-like 40 86 IPR001810 GO:0005515
Dere12g0727 918 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 427 469 IPR000225 GO:0005515
Dere12g0727 918 CDD F-box_AtADLO1-like 39 80 - -
Dere12g0727 918 ProSiteProfiles F-box domain profile. 37 83 IPR001810 GO:0005515
Dere12g0727 918 SMART fbox_2 43 83 IPR001810 GO:0005515
Dere12g0727 918 FunFam Protein ARABIDILLO 2 354 501 - -
Dere12g0727 918 SUPERFAMILY RNI-like 39 292 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere12g0727 570 757 U-box Gene Family AT2G23140 35.979 6.37e-20 93.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere12g0727 12 13409841 13431485 Dere12g0727 12 13409841 13431485 ECH