Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere12g0720 ATGGGTGAAAAAGACGAGGGATTGGGATTGAGTTTGAGCTTGGGCTGGGGAGGGAATCAGAATTCTTTGAAGGTGAATCCCATCAACAACCCTGCACTCTCTCTTCCCAGTCAAAGGACTTCCTGGAATGATGTTTTTCAGTTACCTGATCCGAGCTCCGAGACAAGGTCGTTCCTCCGGGGATTAGATGTGAATTTGGCACCGTCGATGGCGGTGGATTGCGATGACGAGAATGGCGTTTCGTCGCCGAACAGCACGATATCGAGCATCAGTGGGAAGCGAAGCGAGAGGGAAGCGAACGGAGACGAAAACGACACTGAGAGGACCTACGACGAGGATGGCGAGGGCGATGGAATCGGCGGCGACACTTCGAGGAAGAAGCTCAGGCTCTCAAAGGAACAGGCCTTGGTGTTGGAGGAGACATTCAAGGAGCACAATACGCTCAATCCGAAACAAAAGCAGGCATTGGCTAGACAGTTGAATCTGAGGCCTAGGCAAGTGGAGGTGTGGTTTCAGAACAGACGAGCAAGGACCAAGCTGAAGCAAACTGAAGTGGACTGTGAGTACCTGAAGAAGTGTTGTGAGAATCTAACTGAGGAAAACAGAAGGTTGCAGAAGGAAGTGCAAGAACTTAGGGCTCTCAAATTGTCCCCTCATCTCTACATGCACATGAACCCTCCCACCACTCTTACCATGTGCCCTTCGTGCGAGCGCGTCACCGCCTCATCGTCATCCTCCTCGTCCTCCTCAGCCACCGCTGCCGCCGCCTCTGCTGCTGCCCCAACAAACCGCAACCCAGTGGGCCTGAATGTCCAGCGGCCGATCCCAATCAACCCTTGGGCGGCAATGTTGGCCCGACACCGACGGCCGTAG 873 0.5418 MGEKDEGLGLSLSLGWGGNQNSLKVNPINNPALSLPSQRTSWNDVFQLPDPSSETRSFLRGLDVNLAPSMAVDCDDENGVSSPNSTISSISGKRSEREANGDENDTERTYDEDGEGDGIGGDTSRKKLRLSKEQALVLEETFKEHNTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKKCCENLTEENRRLQKEVQELRALKLSPHLYMHMNPPTTLTMCPSCERVTASSSSSSSSSATAAAASAAAPTNRNPVGLNVQRPIPINPWAAMLARHRRP 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere12g0720 290 Gene3D - 129 179 - -
Dere12g0720 290 SMART halz 181 224 IPR003106 GO:0006355|GO:0043565
Dere12g0720 290 SMART HOX_1 123 185 IPR001356 GO:0003677
Dere12g0720 290 Pfam HD-ZIP protein N terminus 1 98 IPR006712 GO:0005634
Dere12g0720 290 MobiDBLite consensus disorder prediction 241 269 - -
Dere12g0720 290 MobiDBLite consensus disorder prediction 78 94 - -
Dere12g0720 290 MobiDBLite consensus disorder prediction 241 272 - -
Dere12g0720 290 Coils Coil 187 217 - -
Dere12g0720 290 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 9 259 - -
Dere12g0720 290 Pfam Homeodomain 125 179 IPR001356 GO:0003677
Dere12g0720 290 CDD homeodomain 125 182 IPR001356 GO:0003677
Dere12g0720 290 FunFam Homeobox-leucine zipper protein 18 109 186 - -
Dere12g0720 290 SUPERFAMILY Homeodomain-like 115 182 IPR009057 -
Dere12g0720 290 MobiDBLite consensus disorder prediction 73 125 - -
Dere12g0720 290 ProSitePatterns 'Homeobox' domain signature. 156 179 IPR017970 GO:0000981|GO:0006355
Dere12g0720 290 Pfam Homeobox associated leucine zipper 181 215 IPR003106 GO:0006355|GO:0043565
Dere12g0720 290 ProSiteProfiles 'Homeobox' domain profile. 121 181 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere12g0720 Dere-ChrDere12 13322507 13324609 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere12g0720 41 288 Homeobox Transcription Factor Family AT3G60390 63.569 1.58e-102 300
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Dere12g0720 HD-ZIP_N 4e-30 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere11g0069 11 924392 929262 Dere12g0720 12 13322507 13324609 CCT
Dere12g0720 12 13322507 13324609 Dere12g0720 12 13322507 13324609 ECH