Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere12g0711 ATGCAAGGGAAGAAGAAGGATCAAGGGCCTGTAAGGAAAGGGCCATGGAAAGCAGAGGAAGATGAGGTGCTTCTAAGCCACGTCAGCAAGTATGGCCCCAGAGACTGGAGCTCCATTCGATCCAAAGGCCTTCTTCAGCGAACCGGCAAGTCTTGCCGTCTTCGTTGGGTTAACAAGCTTCGTCCCAACCTTAAGAATGGATGCAAATTTTCACTAGAGGAAGAGAGGGTGGTGATAGACTTGCAGTCACAGTATGGGAACAAATGGGCCATGATTGCATCTTACTTGCCTGGAAGAACAGACAACGATGTCAAGAATTTCTGGAGTAGTAGGAAAAAGAGGTTGGCTAGGATTCTGCAGACTTCAGTACCGGCCTCCAAATCCCACAAGATCAAAAATAAAGTTCCCACTTTTCACAATGTTCCTCCTTCAGAGGCTCCAAAGTTCAGTTCTTCATCAGAGGACGAAACGTCACTAAAGGCTCAGCCAAGCTTATCATCCTTTCTTGGGAATTCAGAGGTCATAAAAATGGTGCCATTACCAGATCTCATGAACTCCAAGCAATTGACTTCTGACACAAACATAATGAAAGAAGAGTACACTACACCATTTGAGAGCTATGCAAGTACTGACATATGCTCTCAAATTGCTTTACCTCAGATTTTCCCATTCTCAATGGAAAGTCAAGACCTCTCGGCCAGAGCTAATGAGCCTACCAGTTTCATTGATGGGTTTGGCCCTATGGATGCAGCAGAACTTGGAATAGGAACACTTCTTCCCGTTGGGTTTCCTTTCTTTGGGCCATCAGGAAGTTGCAGAATTGGGACAAGGGATCCAATTGGTAACCCCACAAGCCCTGATAGCTTCTTCGATGACTTCCCGGATGACATGTTCGATCACATTCAGCCACCTCCAAGCCCATCATCAGAGCTGTGA 936 0.4615 MQGKKKDQGPVRKGPWKAEEDEVLLSHVSKYGPRDWSSIRSKGLLQRTGKSCRLRWVNKLRPNLKNGCKFSLEEERVVIDLQSQYGNKWAMIASYLPGRTDNDVKNFWSSRKKRLARILQTSVPASKSHKIKNKVPTFHNVPPSEAPKFSSSSEDETSLKAQPSLSSFLGNSEVIKMVPLPDLMNSKQLTSDTNIMKEEYTTPFESYASTDICSQIALPQIFPFSMESQDLSARANEPTSFIDGFGPMDAAELGIGTLLPVGFPFFGPSGSCRIGTRDPIGNPTSPDSFFDDFPDDMFDHIQPPPSPSSEL 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere12g0711 311 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 65 116 IPR017930 -
Dere12g0711 311 Gene3D - 68 137 - -
Dere12g0711 311 MobiDBLite consensus disorder prediction 276 311 - -
Dere12g0711 311 Pfam Myb-like DNA-binding domain 16 75 - -
Dere12g0711 311 FunFam MYB transcription factor 13 65 - -
Dere12g0711 311 CDD SANT 69 108 IPR001005 -
Dere12g0711 311 CDD SANT 15 60 IPR001005 -
Dere12g0711 311 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Dere12g0711 311 ProSiteProfiles Myb-like domain profile. 8 60 IPR001005 -
Dere12g0711 311 ProSiteProfiles Myb-like domain profile. 69 112 IPR001005 -
Dere12g0711 311 Gene3D - 13 65 - -
Dere12g0711 311 PANTHER TRANSCRIPTION FACTOR DUO1 2 310 - -
Dere12g0711 311 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 11 64 IPR017930 -
Dere12g0711 311 SMART sant 66 114 IPR001005 -
Dere12g0711 311 SMART sant 12 62 IPR001005 -
Dere12g0711 311 FunFam Transcription factor GAMYB 68 137 - -
Dere12g0711 311 MobiDBLite consensus disorder prediction 135 156 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere12g0711 Dere-ChrDere12 13196684 13198538 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere12g0711 1 307 MYB Transcription Factor Family AT3G60460 48.148 8.17e-85 255
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Dere12g0711 Myb_DNA-bind_6 9.7e-13 CL0123