Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere12g0696 ATGGAAGGTCTCCAAGTGTTCTTGTGCTTTTACCTACTCGAGAGTTGGCCCAATCAGGTGTATGCTGATTTTGAAGTTTATGGTGGGGCATTGGGATTAGCTTCTTGCTGTTTATATGGTGGCACTTCATATCAAGCTCAAGAAACTAAACTCAAAAAAGGCCTTGATATTATTGTTGGAACTCCAAGATGCATAAAAGATCATATAGAGAGGGAAAATATTGACCTGAGCCAACTAAAGTTCCGCGTCCTTGATGAGGCAGATGAGATGTTGAGGATGAGTTTTGTTGAAGATGTTGAACTCATTCTGGATAAGAAAACTGTTGATCTGGTTGGCAATGAGAAAATGAAAGCTAGCACCAACATTAGGCATATTGTTCTCCTATGTTCTAGCTCTGCCAGGTCCCAGCTTATTCCAGATGTTATATGCTGCTATAGTAATGGAGGCCGGACAATTATATTCACTGTGACAAAGGAGTCTGCTTCTGAGCTTGCAGGGTTGTTGCCTGGTGCACGAGCTCTGCATGGTGATATACAGCAAGCACAGCGTGAGGTTACATTGGCTAGTTTCAGATCTAGGCTTGGGGCTTGGACATTAATGATGTTCAATTACTTATCCAATGTGAACCCCCACGTGATGTAG 642 0.4252 MEGLQVFLCFYLLESWPNQVYADFEVYGGALGLASCCLYGGTSYQAQETKLKKGLDIIVGTPRCIKDHIERENIDLSQLKFRVLDEADEMLRMSFVEDVELILDKKTVDLVGNEKMKASTNIRHIVLLCSSSARSQLIPDVICCYSNGGRTIIFTVTKESASELAGLLPGARALHGDIQQAQREVTLASFRSRLGAWTLMMFNYLSNVNPHVM 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere12g0696 213 Pfam DEAD/DEAH box helicase 18 106 IPR011545 GO:0003676|GO:0005524
Dere12g0696 213 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 18 176 IPR014001 -
Dere12g0696 213 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 47, MITOCHONDRIAL 18 104 - -
Dere12g0696 213 Gene3D - 15 166 IPR027417 -
Dere12g0696 213 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 83 91 IPR000629 -
Dere12g0696 213 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 18 192 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere12g0696 Dere-ChrDere12 12452405 12453142 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere12g0696 28 99 Eukaryotic Initiation Factors Gene Family AT1G72730 36.111 2.15e-08 51.6