Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Dere12g0693 ATGGAACGTGCATTTGTTCCACCCCAACACTTCATTCGTTTAGTGCAAAGGCGAATGGAAAGGCAACGCCGAGAGGATGAACTGAAGAACCAGTCTTCCAAAAAGGCACCTGAGGCAGAGCAGTCTAGTCTAAATAGGGCAGCTAGCCCTCAAGCCGGTCAACAAAGTGGAGGAAGCTTAAAATTGATGAAAGACAAATCTGGTCAGCAAGACAAGGATACACAAAAGGGATCTGGGTTGAAGACAGCTGGGTCTGATGGGGAGATAACAGCAGGATATTTATTAAAAAGAAGTGGCAAAACTAATGGTTGGAGTAGACGATGGCCTGCAGATCCTGAAGAGGAGCTCAGATGGATGTCTCAAGAAGTTCGTGGTTATGTAGAAGCTGTTCTAAACAGCCTTGCAGCTAATGTCCTAAAGGCTGTTGTTCTTTGCCAAGTGGAGAAAGCCAAAGAAGACATGCTTAACCAGTTGTACAGTTCCATCAGTGCCCAAAGCTCGGTAAAAATTGAAGAGCTGCTCCAGGAGGACCATAATGTAAAGCGTAAAAGGGAGCGCATACAGAAACAATCCTCCATTCTTTCAAAGCTGACTAGACAGCTTAGTGTCCATGATAATAGAGCGGCTGCAGCATCTGATTGGTCTGATGAAGGGGATGCAGCAGAAAGCAACTCAGGTTATCGAACATCGTCAGGTAGTGATTGGAGATCTGCGTTTGATGCTGCTGCAAATGCAATGAAGGAAAGCTCTCCATCTAGAAGTTGTGGATATACACCTCGTTGGCAGGATTATGTTCTATCTGACTATCTATATTATAGTTCCTTGGTTATGCATTTTATTGGATTTGCACACAGGTTCTTTCACAGTGATGTGGAGATAATTGTCCAGATGGTGTTGAAGTTGCAGGACTGGGAGGAAGGTTTTGATGCAGCCTTTCGCTTACCAACCTTTCGATCATCAACTGGCTTCAGTGCTTCCTTTGAGTTCTTTACTGCCCTCTTCCCCTTGCTTGCCTTCATGTCAAGGAACATCTACTCAGGAATAATGCTACTGCACAAGAGAAGGGTGCTGCATCCAAAGTCATGGCTTCTTGTTGGGGAACTGGAAAGCCCGAATATAAATGATCAGCAGCGCAGGAAAAACGATCAACAACGTGTTCTTAAGTTCCTGAGAAATCATCAACTAGACGTAATTGTTATAGGAGCTGCTAACGCATCCTGTATGCGGTTGAGAGATGACGTTAATAAGATTATTTCAATGATGTTGGAGGAAAATCTTCAAGATGTCAGTCAAGAGATGAAAGGAATAACTACAGTTTTAGGGGATGAAAGCCTGCCTCGCCTATACGAAGATTCAGAAATTTCTGTGCACCAGCTTCATAGACAACATGGCATTGTGAGGAGGGCAGTGGCTCTTGGACGTTACCTTCTAAACCCATTAGCAATGCTACTTGAGAATTCTAATGTAGAAGAAAGTATGCTACCAAACACATTGCCTACAAAGGTGGGAGATGATAGGTCTGTTCCATATATAGAGGCAGAGTCTGACCAGCATTCTGAACCATTAAATGTTAATCGTGCTGATGTTCCTTCAGTAAGTTGTGATGCTGAAAAATCATGCCTGCAGTCTCCCCCTGAAGCACAAAGCAAGCAAATGAGGAGCTGTGCGAAGGTTCACATGCAAGGAATGGCTGTTGGGAGGGCTGTGGATTTGACTCGGTTTGATGGATATGAGGATCTGCTTAAGAAATTAGAGCAGATGTTTGGCATCAAGGGTGAGCTTTGTGGATCCAGTAAAACATGGTAG 1806 0.4408 MERAFVPPQHFIRLVQRRMERQRREDELKNQSSKKAPEAEQSSLNRAASPQAGQQSGGSLKLMKDKSGQQDKDTQKGSGLKTAGSDGEITAGYLLKRSGKTNGWSRRWPADPEEELRWMSQEVRGYVEAVLNSLAANVLKAVVLCQVEKAKEDMLNQLYSSISAQSSVKIEELLQEDHNVKRKRERIQKQSSILSKLTRQLSVHDNRAAAASDWSDEGDAAESNSGYRTSSGSDWRSAFDAAANAMKESSPSRSCGYTPRWQDYVLSDYLYYSSLVMHFIGFAHRFFHSDVEIIVQMVLKLQDWEEGFDAAFRLPTFRSSTGFSASFEFFTALFPLLAFMSRNIYSGIMLLHKRRVLHPKSWLLVGELESPNINDQQRRKNDQQRVLKFLRNHQLDVIVIGAANASCMRLRDDVNKIISMMLEENLQDVSQEMKGITTVLGDESLPRLYEDSEISVHQLHRQHGIVRRAVALGRYLLNPLAMLLENSNVEESMLPNTLPTKVGDDRSVPYIEAESDQHSEPLNVNRADVPSVSCDAEKSCLQSPPEAQSKQMRSCAKVHMQGMAVGRAVDLTRFDGYEDLLKKLEQMFGIKGELCGSSKTW 601
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Dere12g0693 601 Coils Coil 170 200 - -
Dere12g0693 601 Pfam Dynamin GTPase effector domain 114 197 IPR003130 GO:0003924|GO:0005525
Dere12g0693 601 Gene3D Dynamin, middle domain 1 184 - -
Dere12g0693 601 ProSiteProfiles GED domain profile. 116 209 IPR020850 -
Dere12g0693 601 MobiDBLite consensus disorder prediction 1 85 - -
Dere12g0693 601 MobiDBLite consensus disorder prediction 218 233 - -
Dere12g0693 601 Pfam Holliday-junction resolvase-like of SPT6 373 480 IPR028231 -
Dere12g0693 601 MobiDBLite consensus disorder prediction 209 233 - -
Dere12g0693 601 Coils Coil 373 393 - -
Dere12g0693 601 PANTHER TRANSCRIPTION ELONGATION FACTOR SPT6 373 491 IPR017072 GO:0032968
Dere12g0693 601 MobiDBLite consensus disorder prediction 14 34 - -
Dere12g0693 601 Gene3D - 350 493 IPR037027 GO:0006139
Dere12g0693 601 SUPERFAMILY Ribonuclease H-like 368 484 IPR012337 -
Dere12g0693 601 Gene3D - 548 601 - -
Dere12g0693 601 Pfam AUX/IAA family 549 589 IPR033389 -
Dere12g0693 601 ProSiteProfiles PB1 domain profile. 553 601 IPR000270 GO:0005515
Dere12g0693 601 MobiDBLite consensus disorder prediction 35 63 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Dere12g0693 Dere-ChrDere12 12158528 12161567 Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere12g0693 483 601 B3 DNA Binding Superfamily AT1G59750 58.824 1.66e-35 140
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Dere12g0693 YqgF 8.2e-10 CL0580