LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Dere12g0680	ATGGATTACAAGACCACCGTTGACTCCGACCTCGATCTTCTCGAATCAATCCGAAGCTACCTTCTTGAGGACCACACCGATGCTCTTATGGCGTTTCCCGCCACACTCACCGGCGATGCTCCGGTCTACTTCCAGAGTTCTTGCTCCGGGGCAACGATGAACAACGACAGTGACGTTAACTCTCTGTCTTTCTCATCGGAACAAGCAATTATTAATGCCGGCACTGTGGAGATTTGCGGTGCGGAAAGCGACCTGGGTTCGGTGGCGCGTGGCGGGTATGCGCCGGAGGGTGGGAGGAATTACAGGGGAGTGAGGCGCAGGCCGTGGGGGAAGTATGCAGCGGAGATTAGGGATCCGAAGAAGAACGGCAAGAGAGTGTGGCTCGGGACCTACGAGACGGCTGAGGACGCGGCTTTGGCTTACGATCGAGCCGCTTTCGAGATGCGCGGCTCCAAAGCCAAGCTCAATTTTCCTCATCTTATTGGCTCCAATGTGTCGGAGCCGCCGAGAGTGACCGGAAAGCGGAGACTTCCGGAGCCATGGTCGCCGGCGACGAGTTCGGAGGAGGAGGCGTCGATGAAGATGGAGCGGAGGAAGAGCCCAGTGAGATGCATCTTGGACACGTCGTCGGAGTTGAATGATGAGAGCCAATGGGAGGGGTTGGGGTGGGGCCCACGGCGTTATATGAACGATTTAACTTCAGCGAGTAACGAAGTAATTTGGTGCTTCGAATAA	735	0.5619	MDYKTTVDSDLDLLESIRSYLLEDHTDALMAFPATLTGDAPVYFQSSCSGATMNNDSDVNSLSFSSEQAIINAGTVEICGAESDLGSVARGGYAPEGGRNYRGVRRRPWGKYAAEIRDPKKNGKRVWLGTYETAEDAALAYDRAAFEMRGSKAKLNFPHLIGSNVSEPPRVTGKRRLPEPWSPATSSEEEASMKMERRKSPVRCILDTSSELNDESQWEGLGWGPRRYMNDLTSASNEVIWCFE	244

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Dere12g0680	244	PRINTS	Ethylene responsive element binding protein signature	101	112	IPR001471	GO:0003700\|GO:0006355
	Dere12g0680	244	PRINTS	Ethylene responsive element binding protein signature	124	140	IPR001471	GO:0003700\|GO:0006355
	Dere12g0680	244	ProSiteProfiles	AP2/ERF domain profile.	100	158	IPR001471	GO:0003700\|GO:0006355
	Dere12g0680	244	SUPERFAMILY	DNA-binding domain	100	159	IPR016177	GO:0003677
	Dere12g0680	244	MobiDBLite	consensus disorder prediction	166	199	-	-
	Dere12g0680	244	FunFam	Ethylene-responsive transcription factor 2	99	159	-	-
	Dere12g0680	244	PANTHER	DNA-BINDING DOMAIN	73	192	IPR044808	GO:0003700\|GO:0009873
	Dere12g0680	244	Pfam	AP2 domain	100	150	IPR001471	GO:0003700\|GO:0006355
	Dere12g0680	244	CDD	AP2	100	160	IPR001471	GO:0003700\|GO:0006355
	Dere12g0680	244	Gene3D	AP2/ERF domain	99	159	IPR036955	GO:0003700\|GO:0006355
	Dere12g0680	244	SMART	rav1_2	100	164	IPR001471	GO:0003700\|GO:0006355

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Dere12g0680	Dere-ChrDere12	12011679	12012413	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Dere12g0680	89	180	AP2-EREBP Transcription Factor Family	AT2G44840	75.269	1.59e-44	147

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2/ERF-ERF	Dere12g0680		AP2	1.5e-15	CL0081