Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere12g0679 ATGGCTATGGATTACGATTTTGTTCCTTTGGGATCTGTCCATCCATACCTTCTTCAACCTGATTCCAAGTCTCCGATAAATCTTTCAATCCCAGTTATTTCAAGCAACAATGGTACTGGTTCTGGTATATCAATGGCCTCCCCTAGCTCACACGGTAAGGTCAGTAAAACAGCTGGAAAGGGGGCGCGTGGGGTGAACGCGCCGCCGAGGTGGAAGCATTACAGGGGCGTGAGGCGGAGGCCGTGGGGAAAGTTCGCGGCGGAGATTAGAGACCCGAAGAGGAACGGCGCCAGGGTTTGGCTGGGGACTTATGAGACGGAGGAAGATGCAGCCTTGGCTTATGACAAAGCCGCATTCAAGATGAGAGGCAGCAAAGCCAAGTTGAACTTCCCCCACCTGATCGGCTCCGAAGACGCGGCGGCACCGGAGCCGGTGAGGGTATCAGCTCTGAAGCCACAGTCGCCGCCGGAGAGCTCTTCGCTGACATCGCATGGATCAAAGAGGAGGAAGAGCCTAGCTAGTTTACTGAACAAGCTGGCCAAAAACAGAAGCCAAGTAAAAGTGTTTCAATTTGGAATGAGCTCAAATGTAAATTGTGATCAATGGTTGAATCTCTTCGATGATAATAGTTTGATCTGCTTATCATGA 648 0.5093 MAMDYDFVPLGSVHPYLLQPDSKSPINLSIPVISSNNGTGSGISMASPSSHGKVSKTAGKGARGVNAPPRWKHYRGVRRRPWGKFAAEIRDPKRNGARVWLGTYETEEDAALAYDKAAFKMRGSKAKLNFPHLIGSEDAAAPEPVRVSALKPQSPPESSSLTSHGSKRRKSLASLLNKLAKNRSQVKVFQFGMSSNVNCDQWLNLFDDNSLICLS 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere12g0679 215 PRINTS Ethylene responsive element binding protein signature 74 85 IPR001471 GO:0003700|GO:0006355
Dere12g0679 215 PRINTS Ethylene responsive element binding protein signature 113 133 IPR001471 GO:0003700|GO:0006355
Dere12g0679 215 MobiDBLite consensus disorder prediction 147 169 - -
Dere12g0679 215 ProSiteProfiles AP2/ERF domain profile. 73 131 IPR001471 GO:0003700|GO:0006355
Dere12g0679 215 SUPERFAMILY DNA-binding domain 73 132 IPR016177 GO:0003677
Dere12g0679 215 Gene3D AP2/ERF domain 72 132 IPR036955 GO:0003700|GO:0006355
Dere12g0679 215 PANTHER DNA-BINDING DOMAIN 60 171 IPR044808 GO:0003700|GO:0009873
Dere12g0679 215 Pfam AP2 domain 73 123 IPR001471 GO:0003700|GO:0006355
Dere12g0679 215 FunFam Ethylene-responsive transcription factor 2 72 132 - -
Dere12g0679 215 MobiDBLite consensus disorder prediction 152 169 - -
Dere12g0679 215 CDD AP2 72 133 IPR001471 GO:0003700|GO:0006355
Dere12g0679 215 SMART rav1_2 73 137 IPR001471 GO:0003700|GO:0006355
Dere12g0679 215 MobiDBLite consensus disorder prediction 44 69 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere12g0679 Dere-ChrDere12 12000387 12001034 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere12g0679 45 211 AP2-EREBP Transcription Factor Family AT2G44840 47.929 4.28e-42 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Dere12g0679 AP2 2.1e-15 CL0081