Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere12g0678 ATGTACGGAATGTGCACTTCGTTTTCACAACTCGGCTCCGATTCTGAGTCTTTGACGACGACAACAACGACGTCGTTTCAGAATGCTCCTGCTCCGGTGTATTCACGGAGCCCAAGCTTCGGAAACGTCTTCTTGACGGAGAACTGGAGTGACCTACCTCTAAAGGAAAACGACTCCGACGATATGGTCGTCTATGGAGCCTTGCGTGATGCCGCCCGCACTGGATGGTTTCCCTCCGACGGGGTTGTTCCTGCAACTGCAACTGAAAGTGCAAGTGCAACAATGATGACACAGACAATGGAGAATTTACATGTTGAGAGAGAAAATGAGAAAGCTAATAATACTAATGTTAGTAATGGTGCGTCGTCGGTGATGGCGCGTGGGTGTCACGCAACGAGGGACGAGAGGCGGTACAGGGGAGTGCGGAGGAGGCCTTGGGGGAAGTTCGCGGCGGAGATAAGGGATCCGAAGAAGAACGGCGTGAGGGTGTGGCTTGGGACGTACGAGACGGCTGAGGATGCGGCTTTGGCATATGACCGAGCCGCGTTCAAGATGCGCGGCGCCAAAGCTAAGCTGAATTTTCCTCACTTGATCGGCTCCGATCACGCCGAGCCCGTTCGTGTCACTCTCAAGCGCCGTTTGCCGGAGCTGCCACTGCCCTCGTCATCGTCTTCCTACTCGAGCGCAGAGAAGCGGAGTAAGCCGGAGGGTGAAGCCGTGGCCACTCCTGCTGGGGAGGTAGATAAGGGGATGACGTGGCAATTCTCCATGGATAATGATACATGGTGGCAATAA 795 0.5459 MYGMCTSFSQLGSDSESLTTTTTTSFQNAPAPVYSRSPSFGNVFLTENWSDLPLKENDSDDMVVYGALRDAARTGWFPSDGVVPATATESASATMMTQTMENLHVERENEKANNTNVSNGASSVMARGCHATRDERRYRGVRRRPWGKFAAEIRDPKKNGVRVWLGTYETAEDAALAYDRAAFKMRGAKAKLNFPHLIGSDHAEPVRVTLKRRLPELPLPSSSSSYSSAEKRSKPEGEAVATPAGEVDKGMTWQFSMDNDTWWQ 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere12g0678 264 MobiDBLite consensus disorder prediction 219 264 - -
Dere12g0678 264 Gene3D AP2/ERF domain 136 196 IPR036955 GO:0003700|GO:0006355
Dere12g0678 264 FunFam Ethylene-responsive transcription factor 2 136 196 - -
Dere12g0678 264 ProSiteProfiles AP2/ERF domain profile. 137 195 IPR001471 GO:0003700|GO:0006355
Dere12g0678 264 MobiDBLite consensus disorder prediction 1 32 - -
Dere12g0678 264 PANTHER DNA-BINDING DOMAIN 101 231 IPR044808 GO:0003700|GO:0009873
Dere12g0678 264 Pfam AP2 domain 137 187 IPR001471 GO:0003700|GO:0006355
Dere12g0678 264 SMART rav1_2 137 201 IPR001471 GO:0003700|GO:0006355
Dere12g0678 264 SUPERFAMILY DNA-binding domain 137 196 IPR016177 GO:0003677
Dere12g0678 264 PRINTS Ethylene responsive element binding protein signature 161 177 IPR001471 GO:0003700|GO:0006355
Dere12g0678 264 PRINTS Ethylene responsive element binding protein signature 138 149 IPR001471 GO:0003700|GO:0006355
Dere12g0678 264 CDD AP2 145 197 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere12g0678 Dere-ChrDere12 11984725 11985519 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere12g0678 33 232 AP2-EREBP Transcription Factor Family AT2G44840 53.731 6.16e-65 200
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Dere12g0678 AP2 3.5e-14 CL0081