Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere12g0628 ATGGCTTCTCCTTCGTCTTCCCCAATTGGCTCCACCACCCCACCTCCCGGCCCACCCACCGCAGTCCCCCTCCCTCTCCCTCCGGCGCCGGGGCCAACCTCCGCGTCCTCTCGCCGCCTTCCCCCGCCTTGCTGGTCCCCCGACGAGACTGTCGCTCTGATCGATGCGTACCGCGACAAGTGGTACTCCCTTGGCCGCGGCAACCTGAAGGCTACCCACTGGCAAGAGGTCGCCGATGCCGTCACCTCCCGCTGCCCGAACGCCTTGCCGCCCAAAACAGCTGTGCAGTGCCGCCACAAGATGGAGAAACTCCGAAAGCGATACCGCACTGAGATCCAACGCGCGCGCAACTTGCCCGTCGCACGCTTCAATTCCTCTTGGGTTCACTTCAAGCGAATGGATTCCATGGAGAAAGGCCCCTCTCCTGTCATACCCGATAACGATTCCGATGATAGCCCCGATGAAGTTGACCGCGAGGACAGTGATGAGGATCAAGATTTGTACGAGGAATTCAAAAATGGTGGTGGGTCTAACACGAAGAGCCTGAATAAATTGTATCGGAATGCGATCAGCGGCGGGGAAGGGGTTCGAATTCGAATTCCAAATGGAGTAAGTATAGCTCAACCTGGAAATTCCAAAATTTACGGGAAAATTACTGATCAGAAGTTTAACTATAACAATAACATCCCCAATTCAAAATCTGGCCATAGCTATAATAGCAGCGCCTATTATGCAACAAGGGTTTTGAAAGAGGGAAGTGGATTGGGGAAGAGAGAGAGAGAAAGGGAGAGAGATCCGGTGAGCGAGATGGTGTGTGCAATTAAGGTTTTGGGAGATGGGTTTGTGAGGATGGAGCAAATGAAGATGGAGATGGCAAGGGAGATTGAGAGTATGCGTATGGAGATGGAAATGAAGCGTACTGAGATGATTTTGGAGTCGCAGCAGCGGATTGTGGAGGCGTTTGCGAAGGCAATTTCGGAGAAGAAGACAAAGAGAATGCCATCATCACCCTCGGAATCATAG 1023 0.5298 MASPSSSPIGSTTPPPGPPTAVPLPLPPAPGPTSASSRRLPPPCWSPDETVALIDAYRDKWYSLGRGNLKATHWQEVADAVTSRCPNALPPKTAVQCRHKMEKLRKRYRTEIQRARNLPVARFNSSWVHFKRMDSMEKGPSPVIPDNDSDDSPDEVDREDSDEDQDLYEEFKNGGGSNTKSLNKLYRNAISGGEGVRIRIPNGVSIAQPGNSKIYGKITDQKFNYNNNIPNSKSGHSYNSSAYYATRVLKEGSGLGKRERERERDPVSEMVCAIKVLGDGFVRMEQMKMEMAREIESMRMEMEMKRTEMILESQQRIVEAFAKAISEKKTKRMPSSPSES 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere12g0628 340 Coils Coil 288 308 - -
Dere12g0628 340 MobiDBLite consensus disorder prediction 148 167 - -
Dere12g0628 340 FunFam Trihelix transcription factor ASIL2 45 110 - -
Dere12g0628 340 Gene3D - 45 110 - -
Dere12g0628 340 Pfam Myb/SANT-like DNA-binding domain 43 136 IPR044822 -
Dere12g0628 340 MobiDBLite consensus disorder prediction 134 182 - -
Dere12g0628 340 MobiDBLite consensus disorder prediction 9 37 - -
Dere12g0628 340 Coils Coil 98 118 - -
Dere12g0628 340 MobiDBLite consensus disorder prediction 1 44 - -
Dere12g0628 340 SMART 118neu2 52 141 IPR006578 -
Dere12g0628 340 PANTHER TRIHELIX TRANSCRIPTION FACTOR ASIL2 20 327 IPR044823 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere12g0628 Dere-ChrDere12 10875625 10876647 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere12g0628 5 136 Trihelix Transcription Factor Family AT3G14180 35.374 1.45e-18 84.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Dere12g0628 Myb_DNA-bind_4 9.9e-21 CL0123