Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere12g0626 ATGCCTCCGAGGACGGTGAAGAGAGGAGCAGCAGCGGCTGCGGCGAAGAGAGGGGGCAGAGCTGCCAGAGGAGCGCCAAAGGCCGCCCAGAATCAGCAGCATCCTGAAGCTGCTGAAGAGGTTGTGAAGCACGAAGAAAAGCCTGCTGTTGAGGATGAGGTCAAGGTCGAGGAGAAGCCAGTTGTTGAGGAGAAACCGGTTGTTGTGGAGAAACCGGTCGTTGAGGAGAAGCAAGTGGGTATTGATGTGAACCAGAGGGATTTTGATATGAACCAAGTGGCTTCAGAGGCTGAAGTAGAGGCGAATATTGTCACTAATGGATCAGTTGCTGTGAAAAACGATGAAGAGGAGGTTAAGGAGTCAATAGATGAATATGAGAAAGATGAACGCTTAGATCTGGAGGATAATGATCCAGAGTATGAAGCTGAGGAGTATGGTGGAGTTGATTATGATGAGAAGGAAATTGAACAAGATGAGGTTCAGGAGGTAGGAGATGAGGTGGATGAAGATCTTGAAGAGAATGTAGGTGAAGAAGAGGGTGATATGGGTGAAGAGGAGGTGGAAGATGTTCATGGAGAACTTGAGGGTGAGGAGGATGATGAGCATACTGGAGAGGAGCATGAGCATGCAGGGATGGCTGATGTGGAAGAAGAGGAACACCATGAAGGTTTGAAGGAGAGGAGGAAGCGCAAGGAATTTGAAGTATTTGTTGGGGGTTTAGATAAAGATGCCACTGAGGATGATTTGAGGAAGGTTTTTAGTGCAGTTGGTGAGGTTACTGAGGTGAGGCTTATGATGAATCCTCAGACTGAAAAGAACAAGGGTTTTGCATTCTTGCGTTTTGCGACTGTGGAGCAAGCAAAACGAGCTGTAACAGAGCTAAAAAATCCAGTGATAAATGGCAAACAATGTGGTGTTACCCCAAGTCAGGACAGTGATACCCTCTTTTTGGGTAACATATGCAAGACATGGACAAAGGAAGCTTTAAAGGAGAAGTTGAAACATTATGGAGTTGATAATGTTGAGGATTTGACTTTAGTAGAAGATAGTAACAATGAGGGAATGAACCGTGGATTTGCATTTTTAGAATTTTCATCCCGCTCAGATGCTATGGATGCCTTTAAGCGATTGCAGAAGAGAGATGTTGTGTTTGGAGTTGATAGGCCTGCAAAGGTTTCCTTTGCAGATTCCTTTATTGACCCTGGTGATGAAATTATGGCAAAGGTTAAAACTGTGTTCATTGATGGTCTGCCACCTTCATGGGATGAGGATCGTGTACGGGTTCTTCTTAAGAAATATGGGGAGATTGAGAAGATTGAGCTTGCCAGAAACATGCCTTCTGCCAAGAGGAAGGACTTTGGATTTGTTACATTTGATACTCATGATGCTGCTGTGACATGTGCCAAAAGTATTAACAATGCTGAGTTAGGTGATGGAGACAGCAAGGCAAAAGTAAGGGCCAGATTATCAAGACCACTTCAGAGAGGCCATGGAAAACATGTTGGCCGTGGGGATTTTCGTTCTAGCCGTGCTTCGGGAAGAGTTACAAGGCCATCATGGAGTCGACCTGCTCCTCGTAGTTTTCCTGCCCGCGGGATAAGAGGCATCAGTAGTCGTGTCCCACCAGTCAGGCCTGTTAGTGTGAGGGAGAGACGTCCAGTCATGTCTATCCCAGTAAGAGCCAGGCCGGTGGCTCCTCCGGCGAGATCCTATGATAGGAGACCAGCTGTACCTCCATATCCAAAAAGTAGCATGAAGAGAGATTATGGTCGGCGTGAGGATCTTCCACCTCCAAGAAGCAGAGTAGCTGCAGATTATGGCTCTAGGGTGGCCTTCGAGAGGCGCCCATCTTATAGGGATTATCCAGCCCGTGGCCCTGCCTACTCTGAGCTTCCTAGAAGTAGTACATCTCGAGCTGCACCAAGGAGGGCTTATGTTGATGATGGCTATGGCCAAAGATTTGAGAGGCCTCCTCCTCCTCCACCTCCCCATCCTAGTTACCGTGAGGGACGCCCTCGTGATTATGACACTCTCTCTGGCTCGAAGCGACAATATGCTGCCATAGATGATGTTCCTCCACGATATGCAGAGACTGGTGCTCGCCAATCAAGAGCTCGATTGGACTATGACTATGGAGGTAGTGCTTCACAGTATGGGGATGCTTATGGTGATAGACTAGGGAGATCTAGTATGGGCTATGGTGGCAGCAGAAGTTCTATGTCAAGTCAAGATTCACAAGGGATGTATAGCAGTCGCCAGGGCATGAGTTACGGTGGAGGTTCTTATGGCGGTAGTGATGTTGGTGGTATGTACTCATCAAGTTATGGTGGTGATTACATGTCGCGTGGGAGTGATGTTGGCGGCAGCTCATACTCATCACTCTATTCTGGCAGAGGTGTGGGTGGTAGTAGTGGTTACATGGGTGGTAGTGGGTCTGGGTCTTATTATTAA 2451 0.4757 MPPRTVKRGAAAAAAKRGGRAARGAPKAAQNQQHPEAAEEVVKHEEKPAVEDEVKVEEKPVVEEKPVVVEKPVVEEKQVGIDVNQRDFDMNQVASEAEVEANIVTNGSVAVKNDEEEVKESIDEYEKDERLDLEDNDPEYEAEEYGGVDYDEKEIEQDEVQEVGDEVDEDLEENVGEEEGDMGEEEVEDVHGELEGEEDDEHTGEEHEHAGMADVEEEEHHEGLKERRKRKEFEVFVGGLDKDATEDDLRKVFSAVGEVTEVRLMMNPQTEKNKGFAFLRFATVEQAKRAVTELKNPVINGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVVFGVDRPAKVSFADSFIDPGDEIMAKVKTVFIDGLPPSWDEDRVRVLLKKYGEIEKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGDGDSKAKVRARLSRPLQRGHGKHVGRGDFRSSRASGRVTRPSWSRPAPRSFPARGIRGISSRVPPVRPVSVRERRPVMSIPVRARPVAPPARSYDRRPAVPPYPKSSMKRDYGRREDLPPPRSRVAADYGSRVAFERRPSYRDYPARGPAYSELPRSSTSRAAPRRAYVDDGYGQRFERPPPPPPPHPSYREGRPRDYDTLSGSKRQYAAIDDVPPRYAETGARQSRARLDYDYGGSASQYGDAYGDRLGRSSMGYGGSRSSMSSQDSQGMYSSRQGMSYGGGSYGGSDVGGMYSSSYGGDYMSRGSDVGGSSYSSLYSGRGVGGSSGYMGGSGSGSYY 816
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere12g0626 816 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 412 478 IPR000504 GO:0003723
Dere12g0626 816 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 235 303 IPR000504 GO:0003723
Dere12g0626 816 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 315 381 IPR000504 GO:0003723
Dere12g0626 816 FunFam Heterogeneous nuclear ribonucleoprotein Q isoform A 165 313 - -
Dere12g0626 816 Gene3D - 172 308 IPR012677 -
Dere12g0626 816 CDD RRM_SF 235 306 - -
Dere12g0626 816 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 11 815 - -
Dere12g0626 816 MobiDBLite consensus disorder prediction 489 536 - -
Dere12g0626 816 MobiDBLite consensus disorder prediction 127 202 - -
Dere12g0626 816 Coils Coil 111 131 - -
Dere12g0626 816 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 313 397 IPR000504 GO:0003723
Dere12g0626 816 Gene3D - 399 518 IPR012677 -
Dere12g0626 816 MobiDBLite consensus disorder prediction 37 57 - -
Dere12g0626 816 MobiDBLite consensus disorder prediction 203 226 - -
Dere12g0626 816 CDD RRM_SF 315 393 - -
Dere12g0626 816 CDD RRM_SF 412 478 - -
Dere12g0626 816 MobiDBLite consensus disorder prediction 1 57 - -
Dere12g0626 816 MobiDBLite consensus disorder prediction 729 753 - -
Dere12g0626 816 MobiDBLite consensus disorder prediction 561 678 - -
Dere12g0626 816 MobiDBLite consensus disorder prediction 585 599 - -
Dere12g0626 816 Gene3D - 313 396 IPR012677 -
Dere12g0626 816 SUPERFAMILY RNA-binding domain, RBD 312 478 IPR035979 GO:0003676
Dere12g0626 816 MobiDBLite consensus disorder prediction 114 226 - -
Dere12g0626 816 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 410 492 IPR000504 GO:0003723
Dere12g0626 816 FunFam Heterogeneous nuclear ribonucleoprotein Q 314 396 - -
Dere12g0626 816 SUPERFAMILY RNA-binding domain, RBD 229 311 IPR035979 GO:0003676
Dere12g0626 816 SMART rrm1_1 234 307 IPR000504 GO:0003723
Dere12g0626 816 SMART rrm1_1 314 393 IPR000504 GO:0003723
Dere12g0626 816 SMART rrm1_1 411 486 IPR000504 GO:0003723
Dere12g0626 816 FunFam RNA recognition water-stress protein1 400 521 - -
Dere12g0626 816 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 233 311 IPR000504 GO:0003723
Dere12g0626 816 MobiDBLite consensus disorder prediction 732 753 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere12g0626 Dere-ChrDere12 10846053 10851245 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere12g0626 235 478 Eukaryotic Initiation Factors Gene Family AT1G49760 24.125 6.07e-15 77.0